These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

81 related articles for article (PubMed ID: 28968724)

  • 21. Comparative assessment of scoring functions on an updated benchmark: 2. Evaluation methods and general results.
    Li Y; Han L; Liu Z; Wang R
    J Chem Inf Model; 2014 Jun; 54(6):1717-36. PubMed ID: 24708446
    [TBL] [Abstract][Full Text] [Related]  

  • 22. JADOPPT: java based AutoDock preparing and processing tool.
    García-Pérez C; Peláez R; Therón R; Luis López-Pérez J
    Bioinformatics; 2017 Feb; 33(4):583-585. PubMed ID: 27797779
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Score_set: a CAPRI benchmark for scoring protein complexes.
    Lensink MF; Wodak SJ
    Proteins; 2014 Nov; 82(11):3163-9. PubMed ID: 25179222
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Complementarity of hydrophobic properties in ATP-protein binding: a new criterion to rank docking solutions.
    Pyrkov TV; Kosinsky YA; Arseniev AS; Priestle JP; Jacoby E; Efremov RG
    Proteins; 2007 Feb; 66(2):388-98. PubMed ID: 17094116
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Consensus scoring criteria for improving enrichment in virtual screening.
    Yang JM; Chen YF; Shen TW; Kristal BS; Hsu DF
    J Chem Inf Model; 2005; 45(4):1134-46. PubMed ID: 16045308
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Accounting for observed small angle X-ray scattering profile in the protein-protein docking server ClusPro.
    Xia B; Mamonov A; Leysen S; Allen KN; Strelkov SV; Paschalidis ICh; Vajda S; Kozakov D
    J Comput Chem; 2015 Jul; 36(20):1568-72. PubMed ID: 26095982
    [TBL] [Abstract][Full Text] [Related]  

  • 27. 3D-partner: a web server to infer interacting partners and binding models.
    Chen YC; Lo YS; Hsu WC; Yang JM
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W561-7. PubMed ID: 17517763
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Docking and scoring protein complexes: CAPRI 3rd Edition.
    Lensink MF; Méndez R; Wodak SJ
    Proteins; 2007 Dec; 69(4):704-18. PubMed ID: 17918726
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Ligand-specific scoring functions: improved ranking of docking solutions.
    Pyrkov TV; Priestle JP; Jacoby E; Efremov RG
    SAR QSAR Environ Res; 2008; 19(1-2):91-9. PubMed ID: 18311637
    [TBL] [Abstract][Full Text] [Related]  

  • 30. AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility.
    Ravindranath PA; Forli S; Goodsell DS; Olson AJ; Sanner MF
    PLoS Comput Biol; 2015 Dec; 11(12):e1004586. PubMed ID: 26629955
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Assessment of blind predictions of protein-protein interactions: current status of docking methods.
    Méndez R; Leplae R; De Maria L; Wodak SJ
    Proteins; 2003 Jul; 52(1):51-67. PubMed ID: 12784368
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A "FRankenstein's monster" approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation.
    Kosinski J; Cymerman IA; Feder M; Kurowski MA; Sasin JM; Bujnicki JM
    Proteins; 2003; 53 Suppl 6():369-79. PubMed ID: 14579325
    [TBL] [Abstract][Full Text] [Related]  

  • 33. IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences.
    McGuffin LJ; Atkins JD; Salehe BR; Shuid AN; Roche DB
    Nucleic Acids Res; 2015 Jul; 43(W1):W169-73. PubMed ID: 25820431
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Forging the Basis for Developing Protein-Ligand Interaction Scoring Functions.
    Liu Z; Su M; Han L; Liu J; Yang Q; Li Y; Wang R
    Acc Chem Res; 2017 Feb; 50(2):302-309. PubMed ID: 28182403
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Choosing the Optimal Rigid Receptor for Docking and Scoring in the CSAR 2013/2014 Experiment.
    Baumgartner MP; Camacho CJ
    J Chem Inf Model; 2016 Jun; 56(6):1004-12. PubMed ID: 26222931
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Spatial clustering of protein binding sites for template based protein docking.
    Ghoorah AW; Devignes MD; Smaïl-Tabbone M; Ritchie DW
    Bioinformatics; 2011 Oct; 27(20):2820-7. PubMed ID: 21873637
    [TBL] [Abstract][Full Text] [Related]  

  • 37. The visualCMAT: A web-server to select and interpret correlated mutations/co-evolving residues in protein families.
    Suplatov D; Sharapova Y; Timonina D; Kopylov K; Švedas V
    J Bioinform Comput Biol; 2018 Apr; 16(2):1840005. PubMed ID: 29361894
    [TBL] [Abstract][Full Text] [Related]  

  • 38. NPDock: a web server for protein-nucleic acid docking.
    Tuszynska I; Magnus M; Jonak K; Dawson W; Bujnicki JM
    Nucleic Acids Res; 2015 Jul; 43(W1):W425-30. PubMed ID: 25977296
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MIB: Metal Ion-Binding Site Prediction and Docking Server.
    Lin YF; Cheng CW; Shih CS; Hwang JK; Yu CS; Lu CH
    J Chem Inf Model; 2016 Dec; 56(12):2287-2291. PubMed ID: 27976886
    [TBL] [Abstract][Full Text] [Related]  

  • 40. PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes.
    Pyrkov TV; Chugunov AO; Krylov NA; Nolde DE; Efremov RG
    Bioinformatics; 2009 May; 25(9):1201-2. PubMed ID: 19244385
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 5.