These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

156 related articles for article (PubMed ID: 28968831)

  • 1. DART: a fast and accurate RNA-seq mapper with a partitioning strategy.
    Lin HN; Hsu WL
    Bioinformatics; 2018 Jan; 34(2):190-197. PubMed ID: 28968831
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Kart: a divide-and-conquer algorithm for NGS read alignment.
    Lin HN; Hsu WL
    Bioinformatics; 2017 Aug; 33(15):2281-2287. PubMed ID: 28379292
    [TBL] [Abstract][Full Text] [Related]  

  • 3. STAR: ultrafast universal RNA-seq aligner.
    Dobin A; Davis CA; Schlesinger F; Drenkow J; Zaleski C; Jha S; Batut P; Chaisson M; Gingeras TR
    Bioinformatics; 2013 Jan; 29(1):15-21. PubMed ID: 23104886
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evaluation of tools for long read RNA-seq splice-aware alignment.
    Križanovic K; Echchiki A; Roux J; Šikic M
    Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
    Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
    [TBL] [Abstract][Full Text] [Related]  

  • 6. LAMSA: fast split read alignment with long approximate matches.
    Liu B; Gao Y; Wang Y
    Bioinformatics; 2017 Jan; 33(2):192-201. PubMed ID: 27667793
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes.
    Srivastava A; Sarkar H; Gupta N; Patro R
    Bioinformatics; 2016 Jun; 32(12):i192-i200. PubMed ID: 27307617
    [TBL] [Abstract][Full Text] [Related]  

  • 8. deBGA: read alignment with de Bruijn graph-based seed and extension.
    Liu B; Guo H; Brudno M; Wang Y
    Bioinformatics; 2016 Nov; 32(21):3224-3232. PubMed ID: 27378303
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ASElux: an ultra-fast and accurate allelic reads counter.
    Miao Z; Alvarez M; Pajukanta P; Ko A
    Bioinformatics; 2018 Apr; 34(8):1313-1320. PubMed ID: 29186329
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Fast and SNP-aware short read alignment with SALT.
    Quan W; Liu B; Wang Y
    BMC Bioinformatics; 2021 Aug; 22(Suppl 9):172. PubMed ID: 34433415
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Accel-Align: a fast sequence mapper and aligner based on the seed-embed-extend method.
    Yan Y; Chaturvedi N; Appuswamy R
    BMC Bioinformatics; 2021 May; 22(1):257. PubMed ID: 34016035
    [TBL] [Abstract][Full Text] [Related]  

  • 12. New evaluation methods of read mapping by 17 aligners on simulated and empirical NGS data: an updated comparison of DNA- and RNA-Seq data from Illumina and Ion Torrent technologies.
    Donato L; Scimone C; Rinaldi C; D'Angelo R; Sidoti A
    Neural Comput Appl; 2021; 33(22):15669-15692. PubMed ID: 34155424
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
    Grant GR; Farkas MH; Pizarro AD; Lahens NF; Schug J; Brunk BP; Stoeckert CJ; Hogenesch JB; Pierce EA
    Bioinformatics; 2011 Sep; 27(18):2518-28. PubMed ID: 21775302
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Shouji: a fast and efficient pre-alignment filter for sequence alignment.
    Alser M; Hassan H; Kumar A; Mutlu O; Alkan C
    Bioinformatics; 2019 Nov; 35(21):4255-4263. PubMed ID: 30923804
    [TBL] [Abstract][Full Text] [Related]  

  • 15. HSA: a heuristic splice alignment tool.
    Bu J; Chi X; Jin Z
    BMC Syst Biol; 2013; 7 Suppl 2(Suppl 2):S10. PubMed ID: 24564867
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Long read alignment based on maximal exact match seeds.
    Liu Y; Schmidt B
    Bioinformatics; 2012 Sep; 28(18):i318-i324. PubMed ID: 22962447
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Strobealign: flexible seed size enables ultra-fast and accurate read alignment.
    Sahlin K
    Genome Biol; 2022 Dec; 23(1):260. PubMed ID: 36522758
    [TBL] [Abstract][Full Text] [Related]  

  • 18. rHAT: fast alignment of noisy long reads with regional hashing.
    Liu B; Guan D; Teng M; Wang Y
    Bioinformatics; 2016 Jun; 32(11):1625-31. PubMed ID: 26568628
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
    Wilton R; Li X; Feinberg AP; Szalay AS
    Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Accurate spliced alignment of long RNA sequencing reads.
    Sahlin K; Mäkinen V
    Bioinformatics; 2021 Dec; 37(24):4643-4651. PubMed ID: 34302453
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.