170 related articles for article (PubMed ID: 28973462)
1. Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture.
Bouvy-Liivrand M; Hernández de Sande A; Pölönen P; Mehtonen J; Vuorenmaa T; Niskanen H; Sinkkonen L; Kaikkonen MU; Heinäniemi M
Nucleic Acids Res; 2017 Sep; 45(17):9837-9849. PubMed ID: 28973462
[TBL] [Abstract][Full Text] [Related]
2. Models of global gene expression define major domains of cell type and tissue identity.
Hutchins AP; Yang Z; Li Y; He F; Fu X; Wang X; Li D; Liu K; He J; Wang Y; Chen J; Esteban MA; Pei D
Nucleic Acids Res; 2017 Mar; 45(5):2354-2367. PubMed ID: 28426095
[TBL] [Abstract][Full Text] [Related]
3. Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms.
Chang TC; Pertea M; Lee S; Salzberg SL; Mendell JT
Genome Res; 2015 Sep; 25(9):1401-9. PubMed ID: 26290535
[TBL] [Abstract][Full Text] [Related]
4. Mocap: large-scale inference of transcription factor binding sites from chromatin accessibility.
Chen X; Yu B; Carriero N; Silva C; Bonneau R
Nucleic Acids Res; 2017 May; 45(8):4315-4329. PubMed ID: 28334916
[TBL] [Abstract][Full Text] [Related]
5. MicroRNA transcription start site prediction with multi-objective feature selection.
Bhattacharyya M; Feuerbach L; Bhadra T; Lengauer T; Bandyopadhyay S
Stat Appl Genet Mol Biol; 2012 Jan; 11(1):Article 6. PubMed ID: 22499686
[TBL] [Abstract][Full Text] [Related]
6. The cis-regulatory dynamics of embryonic development at single-cell resolution.
Cusanovich DA; Reddington JP; Garfield DA; Daza RM; Aghamirzaie D; Marco-Ferreres R; Pliner HA; Christiansen L; Qiu X; Steemers FJ; Trapnell C; Shendure J; Furlong EEM
Nature; 2018 Mar; 555(7697):538-542. PubMed ID: 29539636
[TBL] [Abstract][Full Text] [Related]
7. RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation.
Wang G; Wang Y; Shen C; Huang YW; Huang K; Huang TH; Nephew KP; Li L; Liu Y
PLoS One; 2010 Nov; 5(11):e13798. PubMed ID: 21072189
[TBL] [Abstract][Full Text] [Related]
8. miR-335 promotes mesendodermal lineage segregation and shapes a transcription factor gradient in the endoderm.
Yang D; Lutter D; Burtscher I; Uetzmann L; Theis FJ; Lickert H
Development; 2014 Feb; 141(3):514-25. PubMed ID: 24449834
[TBL] [Abstract][Full Text] [Related]
9. TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens.
Prados J; Linder P; Redder P
BMC Genomics; 2016 Nov; 17(1):849. PubMed ID: 27806702
[TBL] [Abstract][Full Text] [Related]
10. A microRNA expression and regulatory element activity atlas of the mouse immune system.
Rose SA; Wroblewska A; Dhainaut M; Yoshida H; Shaffer JM; Bektesevic A; Ben-Zvi B; Rhoads A; Kim EY; Yu B; Lavin Y; Merad M; Buenrostro JD; Brown BD;
Nat Immunol; 2021 Jul; 22(7):914-927. PubMed ID: 34099919
[TBL] [Abstract][Full Text] [Related]
11. PRMT1 Modulates Processing of Asthma-Related Primary MicroRNAs (Pri-miRNAs) into Mature miRNAs in Lung Epithelial Cells.
Zhai W; Sun H; Li Z; Li L; Jin A; Li Y; Chen J; Yang X; Sun Q; Lu S; Roth M
J Immunol; 2021 Jan; 206(1):11-22. PubMed ID: 33239422
[TBL] [Abstract][Full Text] [Related]
12. Understanding the combinatorial action of transcription factors and microRNA regulation from regions of open chromatin.
Zheng G; Zhang P; Wu Z; Dong D
Mol Biosyst; 2016 Feb; 12(2):371-8. PubMed ID: 26661887
[TBL] [Abstract][Full Text] [Related]
13. Regulation of the MIR155 host gene in physiological and pathological processes.
Elton TS; Selemon H; Elton SM; Parinandi NL
Gene; 2013 Dec; 532(1):1-12. PubMed ID: 23246696
[TBL] [Abstract][Full Text] [Related]
14. Genomic analysis of rice microRNA promoters and clusters.
Cui X; Xu SM; Mu DS; Yang ZM
Gene; 2009 Feb; 431(1-2):61-6. PubMed ID: 19073239
[TBL] [Abstract][Full Text] [Related]
15. Cell migration in the Xenopus gastrula.
Huang Y; Winklbauer R
Wiley Interdiscip Rev Dev Biol; 2018 Nov; 7(6):e325. PubMed ID: 29944210
[TBL] [Abstract][Full Text] [Related]
16. Correlations of microRNA:microRNA expression patterns reveal insights into microRNA clusters and global microRNA expression patterns.
Chaulk SG; Ebhardt HA; Fahlman RP
Mol Biosyst; 2016 Jan; 12(1):110-9. PubMed ID: 26563430
[TBL] [Abstract][Full Text] [Related]
17. DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs.
Perdikopanis N; Georgakilas GK; Grigoriadis D; Pierros V; Kavakiotis I; Alexiou P; Hatzigeorgiou A
Nucleic Acids Res; 2021 Jan; 49(D1):D151-D159. PubMed ID: 33245765
[TBL] [Abstract][Full Text] [Related]
18. The Expression and Functional Roles of miRNAs in Embryonic and Lineage-Specific Stem Cells.
Farzaneh M; Alishahi M; Derakhshan Z; Sarani NH; Attari F; Khoshnam SE
Curr Stem Cell Res Ther; 2019; 14(3):278-289. PubMed ID: 30674265
[TBL] [Abstract][Full Text] [Related]
19. Integration of microRNA signatures of distinct mammary epithelial cell types with their gene expression and epigenetic portraits.
Pal B; Chen Y; Bert A; Hu Y; Sheridan JM; Beck T; Shi W; Satterley K; Jamieson P; Goodall GJ; Lindeman GJ; Smyth GK; Visvader JE
Breast Cancer Res; 2015 Jun; 17(1):85. PubMed ID: 26080807
[TBL] [Abstract][Full Text] [Related]
20. Dynamic transcriptional control of macrophage miRNA signature via inflammation responsive enhancers revealed using a combination of next generation sequencing-based approaches.
Czimmerer Z; Horvath A; Daniel B; Nagy G; Cuaranta-Monroy I; Kiss M; Kolostyak Z; Poliska S; Steiner L; Giannakis N; Varga T; Nagy L
Biochim Biophys Acta Gene Regul Mech; 2018 Jan; 1861(1):14-28. PubMed ID: 29133016
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
