These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

479 related articles for article (PubMed ID: 28974235)

  • 1. Alignment-free sequence comparison: benefits, applications, and tools.
    Zielezinski A; Vinga S; Almeida J; Karlowski WM
    Genome Biol; 2017 Oct; 18(1):186. PubMed ID: 28974235
    [TBL] [Abstract][Full Text] [Related]  

  • 2. New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.
    Song K; Ren J; Reinert G; Deng M; Waterman MS; Sun F
    Brief Bioinform; 2014 May; 15(3):343-53. PubMed ID: 24064230
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An overview of multiple sequence alignment.
    Simossis V; Kleinjung J; Heringa J
    Curr Protoc Bioinformatics; 2003 Nov; Chapter 3():3.7.1-3.7.26. PubMed ID: 18428699
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Multiple Sequence Alignment.
    Bawono P; Dijkstra M; Pirovano W; Feenstra A; Abeln S; Heringa J
    Methods Mol Biol; 2017; 1525():167-189. PubMed ID: 27896722
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Benchmarking of alignment-free sequence comparison methods.
    Zielezinski A; Girgis HZ; Bernard G; Leimeister CA; Tang K; Dencker T; Lau AK; Röhling S; Choi JJ; Waterman MS; Comin M; Kim SH; Vinga S; Almeida JS; Chan CX; James BT; Sun F; Morgenstern B; Karlowski WM
    Genome Biol; 2019 Jul; 20(1):144. PubMed ID: 31345254
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Alignment-free sequence comparison-a review.
    Vinga S; Almeida J
    Bioinformatics; 2003 Mar; 19(4):513-23. PubMed ID: 12611807
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Information theory applications for biological sequence analysis.
    Vinga S
    Brief Bioinform; 2014 May; 15(3):376-89. PubMed ID: 24058049
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Using MUMmer to identify similar regions in large sequence sets.
    Delcher AL; Salzberg SL; Phillippy AM
    Curr Protoc Bioinformatics; 2003 Feb; Chapter 10():Unit 10.3. PubMed ID: 18428693
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Gap mapping: a paradigm for aligning two sequences.
    Bellgard M; Gamble T; Reynolds M; Hunter A; Trifonov E; Taplin R
    Appl Bioinformatics; 2003; 2(3 Suppl):S31-5. PubMed ID: 15130814
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A Review of Parallel Implementations for the Smith-Waterman Algorithm.
    Xia Z; Cui Y; Zhang A; Tang T; Peng L; Huang C; Yang C; Liao X
    Interdiscip Sci; 2022 Mar; 14(1):1-14. PubMed ID: 34487327
    [TBL] [Abstract][Full Text] [Related]  

  • 11. [Alignment-free biomolecular sequence comparison method].
    Fu W; Wang Y; Lu D
    Sheng Wu Yi Xue Gong Cheng Xue Za Zhi; 2005 Jun; 22(3):598-601, 605. PubMed ID: 16013268
    [TBL] [Abstract][Full Text] [Related]  

  • 12. tPatternHunter: gapped, fast and sensitive translated homology search.
    Kisman D; Li M; Ma B; Wang L
    Bioinformatics; 2005 Feb; 21(4):542-4. PubMed ID: 15374861
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Finding homologs to nucleic acid or protein sequences using the framesearch program.
    Healy M
    Curr Protoc Bioinformatics; 2002 Aug; Chapter 3():Unit 3.2. PubMed ID: 18792937
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Review of alignment and SNP calling algorithms for next-generation sequencing data.
    Mielczarek M; Szyda J
    J Appl Genet; 2016 Feb; 57(1):71-9. PubMed ID: 26055432
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Pattern recognition and probabilistic measures in alignment-free sequence analysis.
    Schwende I; Pham TD
    Brief Bioinform; 2014 May; 15(3):354-68. PubMed ID: 24096012
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Finding protein and nucleotide similarities with FASTA.
    Pearson W
    Curr Protoc Bioinformatics; 2004 Feb; Chapter 3():Unit3.9. PubMed ID: 18428723
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The iRMSD: a local measure of sequence alignment accuracy using structural information.
    Armougom F; Moretti S; Keduas V; Notredame C
    Bioinformatics; 2006 Jul; 22(14):e35-9. PubMed ID: 16873492
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A parallel pairwise local sequence alignment algorithm.
    Bandyopadhyay S; Mitra R
    IEEE Trans Nanobioscience; 2009 Jun; 8(2):139-46. PubMed ID: 19366648
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparative analysis of algorithms for next-generation sequencing read alignment.
    Ruffalo M; LaFramboise T; Koyutürk M
    Bioinformatics; 2011 Oct; 27(20):2790-6. PubMed ID: 21856737
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multiple sequence alignment with the Divide-and-Conquer method.
    Stoye J
    Gene; 1998 May; 211(2):GC45-56. PubMed ID: 9669886
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 24.