These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 28974263)

  • 41. Quality control of microbiota metagenomics by k-mer analysis.
    Plaza Onate F; Batto JM; Juste C; Fadlallah J; Fougeroux C; Gouas D; Pons N; Kennedy S; Levenez F; Dore J; Ehrlich SD; Gorochov G; Larsen M
    BMC Genomics; 2015 Mar; 16(1):183. PubMed ID: 25887914
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Strain/species identification in metagenomes using genome-specific markers.
    Tu Q; He Z; Zhou J
    Nucleic Acids Res; 2014 Apr; 42(8):e67. PubMed ID: 24523352
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Joint analysis of multiple metagenomic samples.
    Baran Y; Halperin E
    PLoS Comput Biol; 2012; 8(2):e1002373. PubMed ID: 22359490
    [TBL] [Abstract][Full Text] [Related]  

  • 44. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
    Bose T; Haque MM; Reddy C; Mande SS
    PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
    [TBL] [Abstract][Full Text] [Related]  

  • 45. MetaConClust - Unsupervised Binning of Metagenomics Data using Consensus Clustering.
    Sinha D; Sharma A; Mishra DC; Rai A; Lal SB; Kumar S; Farooqi MS; Chaturvedi KK
    Curr Genomics; 2022 Jun; 23(2):137-146. PubMed ID: 36778980
    [No Abstract]   [Full Text] [Related]  

  • 46. MetaPheno: A critical evaluation of deep learning and machine learning in metagenome-based disease prediction.
    LaPierre N; Ju CJ; Zhou G; Wang W
    Methods; 2019 Aug; 166():74-82. PubMed ID: 30885720
    [TBL] [Abstract][Full Text] [Related]  

  • 47. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
    Ren J; Ahlgren NA; Lu YY; Fuhrman JA; Sun F
    Microbiome; 2017 Jul; 5(1):69. PubMed ID: 28683828
    [TBL] [Abstract][Full Text] [Related]  

  • 48. A robust approach for identifying differentially abundant features in metagenomic samples.
    Sohn MB; Du R; An L
    Bioinformatics; 2015 Jul; 31(14):2269-75. PubMed ID: 25792553
    [TBL] [Abstract][Full Text] [Related]  

  • 49. CS-SCORE: Rapid identification and removal of human genome contaminants from metagenomic datasets.
    Haque MM; Bose T; Dutta A; Reddy CV; Mande SS
    Genomics; 2015 Aug; 106(2):116-21. PubMed ID: 25944184
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Spaced seeds improve k-mer-based metagenomic classification.
    Břinda K; Sykulski M; Kucherov G
    Bioinformatics; 2015 Nov; 31(22):3584-92. PubMed ID: 26209798
    [TBL] [Abstract][Full Text] [Related]  

  • 51. gbtools: Interactive Visualization of Metagenome Bins in R.
    Seah BK; Gruber-Vodicka HR
    Front Microbiol; 2015; 6():1451. PubMed ID: 26732662
    [TBL] [Abstract][Full Text] [Related]  

  • 52. A two-stage statistical procedure for feature selection and comparison in functional analysis of metagenomes.
    Pookhao N; Sohn MB; Li Q; Jenkins I; Du R; Jiang H; An L
    Bioinformatics; 2015 Jan; 31(2):158-65. PubMed ID: 25256572
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Multimodal deep learning applied to classify healthy and disease states of human microbiome.
    Lee SJ; Rho M
    Sci Rep; 2022 Jan; 12(1):824. PubMed ID: 35039534
    [TBL] [Abstract][Full Text] [Related]  

  • 54. TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data.
    Chen J; Huang J; Sun Y
    BMC Bioinformatics; 2019 Jun; 20(1):305. PubMed ID: 31164077
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Evaluating the Quantitative Capabilities of Metagenomic Analysis Software.
    Kerepesi C; Grolmusz V
    Curr Microbiol; 2016 May; 72(5):612-6. PubMed ID: 26831696
    [TBL] [Abstract][Full Text] [Related]  

  • 56. KrakenUniq: confident and fast metagenomics classification using unique k-mer counts.
    Breitwieser FP; Baker DN; Salzberg SL
    Genome Biol; 2018 Nov; 19(1):198. PubMed ID: 30445993
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Dirichlet multinomial mixtures: generative models for microbial metagenomics.
    Holmes I; Harris K; Quince C
    PLoS One; 2012; 7(2):e30126. PubMed ID: 22319561
    [TBL] [Abstract][Full Text] [Related]  

  • 58. An omnibus test for differential distribution analysis of microbiome sequencing data.
    Chen J; King E; Deek R; Wei Z; Yu Y; Grill D; Ballman K; Stegle O
    Bioinformatics; 2018 Feb; 34(4):643-651. PubMed ID: 29040451
    [TBL] [Abstract][Full Text] [Related]  

  • 59. MetaTopics: an integration tool to analyze microbial community profile by topic model.
    Yan J; Chuai G; Qi T; Shao F; Zhou C; Zhu C; Yang J; Yu Y; Shi C; Kang N; He Y; Liu Q
    BMC Genomics; 2017 Jan; 18(Suppl 1):962. PubMed ID: 28198670
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Classification of metagenomic sequences: methods and challenges.
    Mande SS; Mohammed MH; Ghosh TS
    Brief Bioinform; 2012 Nov; 13(6):669-81. PubMed ID: 22962338
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.