214 related articles for article (PubMed ID: 28976320)
1. Species Tree Estimation Using ASTRAL: How Many Genes Are Enough?
Shekhar S; Roch S; Mirarab S
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(5):1738-1747. PubMed ID: 28976320
[TBL] [Abstract][Full Text] [Related]
2. Theoretical and Practical Considerations when using Retroelement Insertions to Estimate Species Trees in the Anomaly Zone.
Molloy EK; Gatesy J; Springer MS
Syst Biol; 2022 Apr; 71(3):721-740. PubMed ID: 34677617
[TBL] [Abstract][Full Text] [Related]
3. Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies.
Sayyari E; Mirarab S
Mol Biol Evol; 2016 Jul; 33(7):1654-68. PubMed ID: 27189547
[TBL] [Abstract][Full Text] [Related]
4. ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees.
Zhang C; Rabiee M; Sayyari E; Mirarab S
BMC Bioinformatics; 2018 May; 19(Suppl 6):153. PubMed ID: 29745866
[TBL] [Abstract][Full Text] [Related]
5. Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss.
Legried B; Molloy EK; Warnow T; Roch S
J Comput Biol; 2021 May; 28(5):452-468. PubMed ID: 33325781
[TBL] [Abstract][Full Text] [Related]
6. Scalable Species Tree Inference with External Constraints.
Liu B; Warnow T
J Comput Biol; 2022 Jul; 29(7):664-678. PubMed ID: 35196115
[TBL] [Abstract][Full Text] [Related]
7. Coalescent-Based Analyses of Genomic Sequence Data Provide a Robust Resolution of Phylogenetic Relationships among Major Groups of Gibbons.
Shi CM; Yang Z
Mol Biol Evol; 2018 Jan; 35(1):159-179. PubMed ID: 29087487
[TBL] [Abstract][Full Text] [Related]
8. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
Molloy EK; Warnow T
Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
[TBL] [Abstract][Full Text] [Related]
9. Consistency properties of species tree inference by minimizing deep coalescences.
Than CV; Rosenberg NA
J Comput Biol; 2011 Jan; 18(1):1-15. PubMed ID: 21210728
[TBL] [Abstract][Full Text] [Related]
10. Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.
Chung Y; Ané C
Syst Biol; 2011 May; 60(3):261-75. PubMed ID: 21368324
[TBL] [Abstract][Full Text] [Related]
11. The performance of coalescent-based species tree estimation methods under models of missing data.
Nute M; Chou J; Molloy EK; Warnow T
BMC Genomics; 2018 May; 19(Suppl 5):286. PubMed ID: 29745854
[TBL] [Abstract][Full Text] [Related]
12. Inconsistency of Species Tree Methods under Gene Flow.
Solís-Lemus C; Yang M; Ané C
Syst Biol; 2016 Sep; 65(5):843-51. PubMed ID: 27151419
[TBL] [Abstract][Full Text] [Related]
13. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.
McCormack JE; Huang H; Knowles LL
Syst Biol; 2009 Oct; 58(5):501-8. PubMed ID: 20525604
[TBL] [Abstract][Full Text] [Related]
14. A comparative study of SVDquartets and other coalescent-based species tree estimation methods.
Chou J; Gupta A; Yaduvanshi S; Davidson R; Nute M; Mirarab S; Warnow T
BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S2. PubMed ID: 26449249
[TBL] [Abstract][Full Text] [Related]
15. Anomalous unrooted gene trees.
Degnan JH
Syst Biol; 2013 Jul; 62(4):574-90. PubMed ID: 23576318
[TBL] [Abstract][Full Text] [Related]
16. Multi-allele species reconstruction using ASTRAL.
Rabiee M; Sayyari E; Mirarab S
Mol Phylogenet Evol; 2019 Jan; 130():286-296. PubMed ID: 30393186
[TBL] [Abstract][Full Text] [Related]
17. STELAR: a statistically consistent coalescent-based species tree estimation method by maximizing triplet consistency.
Islam M; Sarker K; Das T; Reaz R; Bayzid MS
BMC Genomics; 2020 Feb; 21(1):136. PubMed ID: 32039704
[TBL] [Abstract][Full Text] [Related]
18. SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search space.
Vachaspati P; Warnow T
Mol Phylogenet Evol; 2018 Jul; 124():122-136. PubMed ID: 29530498
[TBL] [Abstract][Full Text] [Related]
19. ASTRID: Accurate Species TRees from Internode Distances.
Vachaspati P; Warnow T
BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S3. PubMed ID: 26449326
[TBL] [Abstract][Full Text] [Related]
20. ASTRAL: genome-scale coalescent-based species tree estimation.
Mirarab S; Reaz R; Bayzid MS; Zimmermann T; Swenson MS; Warnow T
Bioinformatics; 2014 Sep; 30(17):i541-8. PubMed ID: 25161245
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
