BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

387 related articles for article (PubMed ID: 28977546)

  • 1. ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data.
    Heller D; Krestel R; Ohler U; Vingron M; Marsico A
    Nucleic Acids Res; 2017 Nov; 45(19):11004-11018. PubMed ID: 28977546
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.
    Polishchuk M; Paz I; Kohen R; Mesika R; Yakhini Z; Mandel-Gutfreund Y
    Methods; 2017 Apr; 118-119():73-81. PubMed ID: 28274760
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach.
    Pan X; Shen HB
    BMC Bioinformatics; 2017 Feb; 18(1):136. PubMed ID: 28245811
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Leveraging cross-link modification events in CLIP-seq for motif discovery.
    Bahrami-Samani E; Penalva LO; Smith AD; Uren PJ
    Nucleic Acids Res; 2015 Jan; 43(1):95-103. PubMed ID: 25505146
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Finding the target sites of RNA-binding proteins.
    Li X; Kazan H; Lipshitz HD; Morris QD
    Wiley Interdiscip Rev RNA; 2014; 5(1):111-30. PubMed ID: 24217996
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Prediction of RNA-protein sequence and structure binding preferences using deep convolutional and recurrent neural networks.
    Pan X; Rijnbeek P; Yan J; Shen HB
    BMC Genomics; 2018 Jul; 19(1):511. PubMed ID: 29970003
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.
    Dotu I; Adamson SI; Coleman B; Fournier C; Ricart-Altimiras E; Eyras E; Chuang JH
    PLoS Comput Biol; 2018 Mar; 14(3):e1006078. PubMed ID: 29596423
    [TBL] [Abstract][Full Text] [Related]  

  • 8. mCarts: Genome-Wide Prediction of Clustered Sequence Motifs as Binding Sites for RNA-Binding Proteins.
    Weyn-Vanhentenryck SM; Zhang C
    Methods Mol Biol; 2016; 1421():215-26. PubMed ID: 26965268
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DotAligner: identification and clustering of RNA structure motifs.
    Smith MA; Seemann SE; Quek XC; Mattick JS
    Genome Biol; 2017 Dec; 18(1):244. PubMed ID: 29284541
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A deep boosting based approach for capturing the sequence binding preferences of RNA-binding proteins from high-throughput CLIP-seq data.
    Li S; Dong F; Wu Y; Zhang S; Zhang C; Liu X; Jiang T; Zeng J
    Nucleic Acids Res; 2017 Aug; 45(14):e129. PubMed ID: 28575488
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SSMART: sequence-structure motif identification for RNA-binding proteins.
    Munteanu A; Mukherjee N; Ohler U
    Bioinformatics; 2018 Dec; 34(23):3990-3998. PubMed ID: 29893814
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Motif Discovery from CLIP Experiments.
    Pietrosanto M; Ausiello G; Helmer-Citterich M
    Methods Mol Biol; 2021; 2284():43-50. PubMed ID: 33835436
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Finding RNA-Protein Interaction Sites Using HMMs.
    Wang T; Yun J; Xie Y; Xiao G
    Methods Mol Biol; 2017; 1552():177-184. PubMed ID: 28224499
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Discovering sequence and structure landscapes in RNA interaction motifs.
    Adinolfi M; Pietrosanto M; Parca L; Ausiello G; Ferrè F; Helmer-Citterich M
    Nucleic Acids Res; 2019 Jun; 47(10):4958-4969. PubMed ID: 31162604
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RNA Sequence Context Effects Measured In Vitro Predict In Vivo Protein Binding and Regulation.
    Taliaferro JM; Lambert NJ; Sudmant PH; Dominguez D; Merkin JJ; Alexis MS; Bazile C; Burge CB
    Mol Cell; 2016 Oct; 64(2):294-306. PubMed ID: 27720642
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Prediction of binding property of RNA-binding proteins using multi-sized filters and multi-modal deep convolutional neural network.
    Chung T; Kim D
    PLoS One; 2019; 14(4):e0216257. PubMed ID: 31026297
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RNA Bind-n-Seq: Measuring the Binding Affinity Landscape of RNA-Binding Proteins.
    Lambert NJ; Robertson AD; Burge CB
    Methods Enzymol; 2015; 558():465-493. PubMed ID: 26068750
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Prediction of clustered RNA-binding protein motif sites in the mammalian genome.
    Zhang C; Lee KY; Swanson MS; Darnell RB
    Nucleic Acids Res; 2013 Aug; 41(14):6793-807. PubMed ID: 23685613
    [TBL] [Abstract][Full Text] [Related]  

  • 19. High-throughput characterization of protein-RNA interactions.
    Cook KB; Hughes TR; Morris QD
    Brief Funct Genomics; 2015 Jan; 14(1):74-89. PubMed ID: 25504152
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Using RNA secondary structures to guide sequence motif finding towards single-stranded regions.
    Hiller M; Pudimat R; Busch A; Backofen R
    Nucleic Acids Res; 2006; 34(17):e117. PubMed ID: 16987907
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.