BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

63 related articles for article (PubMed ID: 28979763)

  • 1. Viewing RNA-seq data on the entire human genome.
    Weitz EM; Pantano L; Zhu J; Upton B; Busby B
    F1000Res; 2017; 6():596. PubMed ID: 28979763
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping.
    Busby B; Lesko M; ; Federer L
    F1000Res; 2016; 5():672. PubMed ID: 27134733
    [TBL] [Abstract][Full Text] [Related]  

  • 3. pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive.
    Choudhary S
    F1000Res; 2019; 8():532. PubMed ID: 31114675
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data.
    Mahi NA; Najafabadi MF; Pilarczyk M; Kouril M; Medvedovic M
    Sci Rep; 2019 May; 9(1):7580. PubMed ID: 31110304
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SeqAcademy: an educational pipeline for RNA-Seq and ChIP-Seq analysis.
    Ather SH; Awe OI; Butler TJ; Denka T; Semick SA; Tang W; Busby B
    F1000Res; 2018; 7():. PubMed ID: 33014338
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV).
    Rangwala SH; Kuznetsov A; Ananiev V; Asztalos A; Borodin E; Evgeniev V; Joukov V; Lotov V; Pannu R; Rudnev D; Shkeda A; Weitz EM; Schneider VA
    Genome Res; 2021 Jan; 31(1):159-169. PubMed ID: 33239395
    [TBL] [Abstract][Full Text] [Related]  

  • 7. NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements.
    Connor R; Brister R; Buchmann JP; Deboutte W; Edwards R; Martí-Carreras J; Tisza M; Zalunin V; Andrade-Martínez J; Cantu A; D'Amour M; Efremov A; Fleischmann L; Forero-Junco L; Garmaeva S; Giluso M; Glickman C; Henderson M; Kellman B; Kristensen D; Leubsdorf C; Levi K; Levi S; Pakala S; Peddu V; Ponsero A; Ribeiro E; Roy F; Rutter L; Saha S; Shakya M; Shean R; Miller M; Tully B; Turkington C; Youens-Clark K; Vanmechelen B; Busby B
    Genes (Basel); 2019 Sep; 10(9):. PubMed ID: 31527408
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MetaRNA-Seq: An Interactive Tool to Browse and Annotate Metadata from RNA-Seq Studies.
    Kumar P; Halama A; Hayat S; Billing AM; Gupta M; Yousri NA; Smith GM; Suhre K
    Biomed Res Int; 2015; 2015():318064. PubMed ID: 26380270
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Gene expression profiling by high throughput sequencing to determine signatures for the bovine receptive uterus at early gestation.
    Van Hoeck V; Scolari SC; Pugliesi G; Gonella-Diaza AM; Andrade SC; Gasparin GR; Coutinho LL; Binelli M
    Genom Data; 2015 Sep; 5():94-6. PubMed ID: 26484233
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis.
    Moyer E; Hagenauer M; Lesko M; Francis F; Rodriguez O; Nagarajan V; Huser V; Busby B
    F1000Res; 2016; 5():674. PubMed ID: 27158457
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Mining microarray data at NCBI's Gene Expression Omnibus (GEO)*.
    Barrett T; Edgar R
    Methods Mol Biol; 2006; 338():175-90. PubMed ID: 16888359
    [TBL] [Abstract][Full Text] [Related]  

  • 12. All of gene expression (AOE): An integrated index for public gene expression databases.
    Bono H
    PLoS One; 2020; 15(1):e0227076. PubMed ID: 31978081
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Good Citizenship Made Easy: A Step-by-Step Guide to Submitting RNA-Seq Data to NCBI.
    Feindt W; Oppenheim SJ; DeSalle R; Mehr S
    Curr Protoc Bioinformatics; 2018 Dec; 64(1):e67. PubMed ID: 30422394
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Genome-wide RNA-seq and ChIP-seq reveal Linc-YY1 function in regulating YY1/PRC2 activity during skeletal myogenesis.
    Sun K; Zhou L; Zhao Y; Wang H; Sun H
    Genom Data; 2016 Mar; 7():247-9. PubMed ID: 26981420
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps.
    Khomtchouk BB; Hennessy JR; Wahlestedt C
    BMC Bioinformatics; 2016 Sep; 17(1):390. PubMed ID: 27659774
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive.
    Bernstein MN; Gladstein A; Latt KZ; Clough E; Busby B; Dillman A
    F1000Res; 2020; 9():376. PubMed ID: 32864105
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Interactive visualization of whole eukaryote genome alignments using NCBI's Comparative Genome Viewer (CGV).
    Rangwala SH; Rudnev DV; Ananiev VV; Asztalos A; Benica B; Borodin EA; Bouk N; Evgeniev VI; Kodali VK; Lotov V; Mozes E; Oh DH; Omelchenko MV; Savkina S; Sukharnikov E; Virothaisakun J; Murphy TD; Pruitt KD; Schneider VA
    bioRxiv; 2023 Nov; ():. PubMed ID: 38077029
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Extraction of poly(A) sites from large-scale RNA-Seq data.
    Dong M; Ji G; Li QQ; Liang C
    Methods Mol Biol; 2015; 1255():25-37. PubMed ID: 25487201
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads.
    Song L; Florea L
    Gigascience; 2015; 4():48. PubMed ID: 26500767
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Database resources of the National Center for Biotechnology Information.
    Wheeler DL; Barrett T; Benson DA; Bryant SH; Canese K; Chetvernin V; Church DM; DiCuccio M; Edgar R; Federhen S; Geer LY; Kapustin Y; Khovayko O; Landsman D; Lipman DJ; Madden TL; Maglott DR; Ostell J; Miller V; Pruitt KD; Schuler GD; Sequeira E; Sherry ST; Sirotkin K; Souvorov A; Starchenko G; Tatusov RL; Tatusova TA; Wagner L; Yaschenko E
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D5-12. PubMed ID: 17170002
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.