161 related articles for article (PubMed ID: 28991478)
1. Role of Terahertz (THz) Fluctuations in the Allosteric Properties of the PDZ Domains.
Conti Nibali V; Morra G; Havenith M; Colombo G
J Phys Chem B; 2017 Nov; 121(44):10200-10208. PubMed ID: 28991478
[TBL] [Abstract][Full Text] [Related]
2. Hidden electrostatic basis of dynamic allostery in a PDZ domain.
Kumawat A; Chakrabarty S
Proc Natl Acad Sci U S A; 2017 Jul; 114(29):E5825-E5834. PubMed ID: 28634294
[TBL] [Abstract][Full Text] [Related]
3. Mechanisms for allosteric activation of protease DegS by ligand binding and oligomerization as revealed from molecular dynamics simulations.
Lu C; Stock G; Knecht V
Proteins; 2016 Nov; 84(11):1690-1705. PubMed ID: 27556733
[TBL] [Abstract][Full Text] [Related]
4. Causality, transfer entropy, and allosteric communication landscapes in proteins with harmonic interactions.
Hacisuleyman A; Erman B
Proteins; 2017 Jun; 85(6):1056-1064. PubMed ID: 28241380
[TBL] [Abstract][Full Text] [Related]
5. Molecular Dynamics-Markov State Model of Protein Ligand Binding and Allostery in CRIB-PDZ: Conformational Selection and Induced Fit.
Thayer KM; Lakhani B; Beveridge DL
J Phys Chem B; 2017 Jun; 121(22):5509-5514. PubMed ID: 28489401
[TBL] [Abstract][Full Text] [Related]
6. Two-Dimensional Spectroscopy at Terahertz Frequencies.
Lu J; Li X; Zhang Y; Hwang HY; Ofori-Okai BK; Nelson KA
Top Curr Chem (Cham); 2018 Jan; 376(1):6. PubMed ID: 29362935
[TBL] [Abstract][Full Text] [Related]
7. Protonation-Induced Dynamic Allostery in PDZ Domain: Evidence of Perturbation-Independent Universal Response Network.
Kumawat A; Chakrabarty S
J Phys Chem Lett; 2020 Nov; 11(21):9026-9031. PubMed ID: 33043672
[TBL] [Abstract][Full Text] [Related]
8. Allosteric Signaling in PDZ Energetic Networks: Embedding Error Analysis.
Cowan BS; Beveridge DL; Thayer KM
J Phys Chem B; 2023 Jan; 127(3):623-633. PubMed ID: 36626697
[TBL] [Abstract][Full Text] [Related]
9. Probing Protein Allostery as a Residue-Specific Concept via Residue Response Maps.
Hayatshahi HS; Ahuactzin E; Tao P; Wang S; Liu J
J Chem Inf Model; 2019 Nov; 59(11):4691-4705. PubMed ID: 31589429
[TBL] [Abstract][Full Text] [Related]
10. Time-resolved observation of protein allosteric communication.
Buchenberg S; Sittel F; Stock G
Proc Natl Acad Sci U S A; 2017 Aug; 114(33):E6804-E6811. PubMed ID: 28760989
[TBL] [Abstract][Full Text] [Related]
11. Singular value decomposition for the correlation of atomic fluctuations with arbitrary angle.
Yu M; Ma X; Cao H; Chong B; Lai L; Liu Z
Proteins; 2018 Oct; 86(10):1075-1087. PubMed ID: 30019778
[TBL] [Abstract][Full Text] [Related]
12. Mechanisms of Differential Allosteric Modulation in Homologous Proteins: Insights from the Analysis of Internal Dynamics and Energetics of PDZ Domains.
Morra G; Genoni A; Colombo G
J Chem Theory Comput; 2014 Dec; 10(12):5677-89. PubMed ID: 26583250
[TBL] [Abstract][Full Text] [Related]
13. Perspective: Watching low-frequency vibrations of water in biomolecular recognition by THz spectroscopy.
Xu Y; Havenith M
J Chem Phys; 2015 Nov; 143(17):170901. PubMed ID: 26547148
[TBL] [Abstract][Full Text] [Related]
14. Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery.
Kalescky R; Zhou H; Liu J; Tao P
PLoS Comput Biol; 2016 Apr; 12(4):e1004893. PubMed ID: 27115535
[TBL] [Abstract][Full Text] [Related]
15. Supertertiary protein structure affects an allosteric network.
Laursen L; Kliche J; Gianni S; Jemth P
Proc Natl Acad Sci U S A; 2020 Sep; 117(39):24294-24304. PubMed ID: 32929026
[TBL] [Abstract][Full Text] [Related]
16. Seeking allosteric networks in PDZ domains.
Gautier C; Laursen L; Jemth P; Gianni S
Protein Eng Des Sel; 2018 Oct; 31(10):367-373. PubMed ID: 30690500
[TBL] [Abstract][Full Text] [Related]
17. Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning.
Gerek ZN; Ozkan SB
PLoS Comput Biol; 2011 Oct; 7(10):e1002154. PubMed ID: 21998559
[TBL] [Abstract][Full Text] [Related]
18. Real-time observation of ligand-induced allosteric transitions in a PDZ domain.
Bozovic O; Zanobini C; Gulzar A; Jankovic B; Buhrke D; Post M; Wolf S; Stock G; Hamm P
Proc Natl Acad Sci U S A; 2020 Oct; 117(42):26031-26039. PubMed ID: 33020277
[TBL] [Abstract][Full Text] [Related]
19. Structure-based identification of CaMKIIα-interacting MUPP1 PDZ domains and rational design of peptide ligands to target such interaction in human fertilization.
Zhang YL; Han ZF; Sun YP
Amino Acids; 2016 Jun; 48(6):1509-21. PubMed ID: 26984442
[TBL] [Abstract][Full Text] [Related]
20. Using THz time-scale infrared spectroscopy to examine the role of collective, thermal fluctuations in the formation of myoglobin allosteric communication pathways and ligand specificity.
Woods KN
Soft Matter; 2014 Jun; 10(24):4387-402. PubMed ID: 24801988
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
