122 related articles for article (PubMed ID: 29028267)
1. VariantTools: an extensible framework for developing and testing variant callers.
Lawrence M; Gentleman R
Bioinformatics; 2017 Oct; 33(20):3311-3313. PubMed ID: 29028267
[TBL] [Abstract][Full Text] [Related]
2. GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data.
Pal K; Bystry V; Reigl T; Demko M; Krejci A; Touloumenidou T; Stalika E; Tichy B; Ghia P; Stamatopoulos K; Pospisilova S; Malcikova J; Darzentas N
Bioinformatics; 2017 Dec; 33(23):3802-3804. PubMed ID: 29036643
[TBL] [Abstract][Full Text] [Related]
3. VIPER: a web application for rapid expert review of variant calls.
Wöste M; Dugas M
Bioinformatics; 2018 Jun; 34(11):1928-1929. PubMed ID: 29346510
[TBL] [Abstract][Full Text] [Related]
4. cyvcf2: fast, flexible variant analysis with Python.
Pedersen BS; Quinlan AR
Bioinformatics; 2017 Jun; 33(12):1867-1869. PubMed ID: 28165109
[TBL] [Abstract][Full Text] [Related]
5. GTC: how to maintain huge genotype collections in a compressed form.
Danek A; Deorowicz S
Bioinformatics; 2018 Jun; 34(11):1834-1840. PubMed ID: 29351600
[TBL] [Abstract][Full Text] [Related]
6. FlashPCA2: principal component analysis of Biobank-scale genotype datasets.
Abraham G; Qiu Y; Inouye M
Bioinformatics; 2017 Sep; 33(17):2776-2778. PubMed ID: 28475694
[TBL] [Abstract][Full Text] [Related]
7. VarMatch: robust matching of small variant datasets using flexible scoring schemes.
Sun C; Medvedev P
Bioinformatics; 2017 May; 33(9):1301-1308. PubMed ID: 28011786
[TBL] [Abstract][Full Text] [Related]
8. Canvas SPW: calling de novo copy number variants in pedigrees.
Ivakhno S; Roller E; Colombo C; Tedder P; Cox AJ
Bioinformatics; 2018 Feb; 34(3):516-518. PubMed ID: 29028893
[TBL] [Abstract][Full Text] [Related]
9. MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets.
Fort A; Panousis NI; Garieri M; Antonarakis SE; Lappalainen T; Dermitzakis ET; Delaneau O
Bioinformatics; 2017 Jun; 33(12):1895-1897. PubMed ID: 28186259
[TBL] [Abstract][Full Text] [Related]
10. Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.
Shringarpure SS; Mathias RA; Hernandez RD; O'Connor TD; Szpiech ZA; Torres R; De La Vega FM; Bustamante CD; Barnes KC; Taub MA;
Bioinformatics; 2017 Apr; 33(8):1147-1153. PubMed ID: 28035032
[TBL] [Abstract][Full Text] [Related]
11. Constructing linkage maps in the genomics era with MapDisto 2.0.
Heffelfinger C; Fragoso CA; Lorieux M
Bioinformatics; 2017 Jul; 33(14):2224-2225. PubMed ID: 28369214
[TBL] [Abstract][Full Text] [Related]
12. SiNPle: Fast and Sensitive Variant Calling for Deep Sequencing Data.
Ferretti L; Tennakoon C; Silesian A; Ribeca GFA
Genes (Basel); 2019 Jul; 10(8):. PubMed ID: 31349684
[TBL] [Abstract][Full Text] [Related]
13. Integrated annotation and analysis of genetic variants from next-generation sequencing studies with variant tools.
San Lucas FA; Wang G; Scheet P; Peng B
Bioinformatics; 2012 Feb; 28(3):421-2. PubMed ID: 22138362
[TBL] [Abstract][Full Text] [Related]
14. Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.
Okonechnikov K; Conesa A; García-Alcalde F
Bioinformatics; 2016 Jan; 32(2):292-4. PubMed ID: 26428292
[TBL] [Abstract][Full Text] [Related]
15. Wessim: a whole-exome sequencing simulator based on in silico exome capture.
Kim S; Jeong K; Bafna V
Bioinformatics; 2013 Apr; 29(8):1076-7. PubMed ID: 23413434
[TBL] [Abstract][Full Text] [Related]
16. Succinct colored de Bruijn graphs.
Muggli MD; Bowe A; Noyes NR; Morley PS; Belk KE; Raymond R; Gagie T; Puglisi SJ; Boucher C
Bioinformatics; 2017 Oct; 33(20):3181-3187. PubMed ID: 28200001
[TBL] [Abstract][Full Text] [Related]
17. SAMFIRE: multi-locus variant calling for time-resolved sequence data.
Illingworth CJ
Bioinformatics; 2016 Jul; 32(14):2208-9. PubMed ID: 27153641
[TBL] [Abstract][Full Text] [Related]
18. SNP calling using genotype model selection on high-throughput sequencing data.
You N; Murillo G; Su X; Zeng X; Xu J; Ning K; Zhang S; Zhu J; Cui X
Bioinformatics; 2012 Mar; 28(5):643-50. PubMed ID: 22253293
[TBL] [Abstract][Full Text] [Related]
19. VEXOR: an integrative environment for prioritization of functional variants in fine-mapping analysis.
Lemaçon A; Joly Beauparlant C; Soucy P; Allen J; Easton D; Kraft P; Simard J; Droit A
Bioinformatics; 2017 May; 33(9):1389-1391. PubMed ID: 28453673
[TBL] [Abstract][Full Text] [Related]
20. Simple, rapid and accurate genotyping-by-sequencing from aligned whole genomes with ArrayMaker.
Willet CE; Haase B; Charleston MA; Wade CM
Bioinformatics; 2015 Feb; 31(4):599-601. PubMed ID: 25336502
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
