These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

260 related articles for article (PubMed ID: 29028869)

  • 1. MG-RAST version 4-lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis.
    Meyer F; Bagchi S; Chaterji S; Gerlach W; Grama A; Harrison T; Paczian T; Trimble WL; Wilke A
    Brief Bioinform; 2019 Jul; 20(4):1151-1159. PubMed ID: 29028869
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Mibianto: ultra-efficient online microbiome analysis through k-mer based metagenomics.
    Hirsch P; Molano LG; Engel A; Zentgraf J; Rahmann S; Hannig M; Müller R; Kern F; Keller A; Schmartz GP
    Nucleic Acids Res; 2024 Jul; 52(W1):W407-W414. PubMed ID: 38716863
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics.
    Kushwaha SK; Manoharan L; Meerupati T; Hedlund K; Ahrén D
    BMC Bioinformatics; 2015 Feb; 16(1):65. PubMed ID: 25880302
    [TBL] [Abstract][Full Text] [Related]  

  • 5. LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome.
    Yang C; Zhang Z; Huang Y; Xie X; Liao H; Xiao J; Veldsman WP; Yin K; Fang X; Zhang L
    Gigascience; 2024 Jan; 13():. PubMed ID: 38869148
    [TBL] [Abstract][Full Text] [Related]  

  • 6. LEMMI: a continuous benchmarking platform for metagenomics classifiers.
    Seppey M; Manni M; Zdobnov EM
    Genome Res; 2020 Aug; 30(8):1208-1216. PubMed ID: 32616517
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Practical evaluation of 11 de novo assemblers in metagenome assembly.
    Forouzan E; Shariati P; Mousavi Maleki MS; Karkhane AA; Yakhchali B
    J Microbiol Methods; 2018 Aug; 151():99-105. PubMed ID: 29953874
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Graph mining for next generation sequencing: leveraging the assembly graph for biological insights.
    Warnke-Sommer J; Ali H
    BMC Genomics; 2016 May; 17():340. PubMed ID: 27154001
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Watchdog - a workflow management system for the distributed analysis of large-scale experimental data.
    Kluge M; Friedel CC
    BMC Bioinformatics; 2018 Mar; 19(1):97. PubMed ID: 29534677
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Offline Next Generation Metagenomics Sequence Analysis Using MinION Detection Software (MINDS).
    Deshpande SV; Reed TM; Sullivan RF; Kerkhof LJ; Beigel KM; Wade MM
    Genes (Basel); 2019 Jul; 10(8):. PubMed ID: 31366182
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.
    Maarala AI; Bzhalava Z; Dillner J; Heljanko K; Bzhalava D
    Bioinformatics; 2018 Mar; 34(6):928-935. PubMed ID: 29106455
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Web Resources for Metagenomics Studies.
    Dudhagara P; Bhavsar S; Bhagat C; Ghelani A; Bhatt S; Patel R
    Genomics Proteomics Bioinformatics; 2015 Oct; 13(5):296-303. PubMed ID: 26602607
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A metagenomics portal for a democratized sequencing world.
    Wilke A; Glass EM; Bartels D; Bischof J; Braithwaite D; D'Souza M; Gerlach W; Harrison T; Keegan K; Matthews H; Kottmann R; Paczian T; Tang W; Trimble WL; Yilmaz P; Wilkening J; Desai N; Meyer F
    Methods Enzymol; 2013; 531():487-523. PubMed ID: 24060134
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support.
    Abouelhoda M; Issa SA; Ghanem M
    BMC Bioinformatics; 2012 May; 13():77. PubMed ID: 22559942
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis.
    Scholz MB; Lo CC; Chain PS
    Curr Opin Biotechnol; 2012 Feb; 23(1):9-15. PubMed ID: 22154470
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.
    Meyer F; Paarmann D; D'Souza M; Olson R; Glass EM; Kubal M; Paczian T; Rodriguez A; Stevens R; Wilke A; Wilkening J; Edwards RA
    BMC Bioinformatics; 2008 Sep; 9():386. PubMed ID: 18803844
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A-GAME: improving the assembly of pooled functional metagenomics sequence data.
    Chiara M; Placido A; Picardi E; Ceci LR; Horner DS; Pesole G
    BMC Genomics; 2018 Jan; 19(1):44. PubMed ID: 29329522
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A RESTful API for accessing microbial community data for MG-RAST.
    Wilke A; Bischof J; Harrison T; Brettin T; D'Souza M; Gerlach W; Matthews H; Paczian T; Wilkening J; Glass EM; Desai N; Meyer F
    PLoS Comput Biol; 2015 Jan; 11(1):e1004008. PubMed ID: 25569221
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
    Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
    Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Processing a 16S rRNA Sequencing Dataset with the Microbiome Helper Workflow.
    Douglas GM; Comeau AM; Langille MGI
    Methods Mol Biol; 2018; 1849():131-141. PubMed ID: 30298252
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.