131 related articles for article (PubMed ID: 29028876)
1. Systematic comparative study of computational methods for T-cell receptor sequencing data analysis.
Afzal S; Gil-Farina I; Gabriel R; Ahmad S; von Kalle C; Schmidt M; Fronza R
Brief Bioinform; 2019 Jan; 20(1):222-234. PubMed ID: 29028876
[TBL] [Abstract][Full Text] [Related]
2. A new high-throughput sequencing method for determining diversity and similarity of T cell receptor (TCR) α and β repertoires and identifying potential new invariant TCR α chains.
Kitaura K; Shini T; Matsutani T; Suzuki R
BMC Immunol; 2016 Oct; 17(1):38. PubMed ID: 27729009
[TBL] [Abstract][Full Text] [Related]
3. Ultra-efficient sequencing of T Cell receptor repertoires reveals shared responses in muscle from patients with Myositis.
Montagne JM; Zheng XA; Pinal-Fernandez I; Milisenda JC; Christopher-Stine L; Lloyd TE; Mammen AL; Larman HB
EBioMedicine; 2020 Sep; 59():102972. PubMed ID: 32891935
[TBL] [Abstract][Full Text] [Related]
4. Tools for fundamental analysis functions of TCR repertoires: a systematic comparison.
Zhang Y; Yang X; Zhang Y; Zhang Y; Wang M; Ou JX; Zhu Y; Zeng H; Wu J; Lan C; Zhou HW; Yang W; Zhang Z
Brief Bioinform; 2020 Sep; 21(5):1706-1716. PubMed ID: 31624828
[TBL] [Abstract][Full Text] [Related]
5. Current status and recent advances of next generation sequencing techniques in immunological repertoire.
Hou XL; Wang L; Ding YL; Xie Q; Diao HY
Genes Immun; 2016 Apr; 17(3):153-64. PubMed ID: 26963138
[TBL] [Abstract][Full Text] [Related]
6. A clonotype nomenclature for T cell receptors.
Yassai MB; Naumov YN; Naumova EN; Gorski J
Immunogenetics; 2009 Jul; 61(7):493-502. PubMed ID: 19568742
[TBL] [Abstract][Full Text] [Related]
7. [Effects of T cell receptor gene rearrangement on BV CDR3 in Jurkat cells].
Zou HY; Ma L; Yao XS; Wen Q; Luo W; Wang XN
Nan Fang Yi Ke Da Xue Xue Bao; 2006 Jul; 26(7):939-43. PubMed ID: 16864082
[TBL] [Abstract][Full Text] [Related]
8. [T cell repertoires correlate with pathogenesis of chronic idiopathic thrombocytopenic purpura].
Zhu X; Zhu P; Guo XL
Zhonghua Yi Xue Za Zhi; 2005 Dec; 85(47):3316-22. PubMed ID: 16409835
[TBL] [Abstract][Full Text] [Related]
9. TCRklass: a new K-string-based algorithm for human and mouse TCR repertoire characterization.
Yang X; Liu D; Lv N; Zhao F; Liu F; Zou J; Chen Y; Xiao X; Wu J; Liu P; Gao J; Hu Y; Shi Y; Liu J; Zhang R; Chen C; Ma J; Gao GF; Zhu B
J Immunol; 2015 Jan; 194(1):446-54. PubMed ID: 25404364
[TBL] [Abstract][Full Text] [Related]
10. Assessment of T-cell receptor repertoire and clonal expansion in peripheral T-cell lymphoma using RNA-seq data.
Gong Q; Wang C; Zhang W; Iqbal J; Hu Y; Greiner TC; Cornish A; Kim JH; Rabadan R; Abate F; Wang X; Inghirami GG; McKeithan TW; Chan WC
Sci Rep; 2017 Sep; 7(1):11301. PubMed ID: 28900149
[TBL] [Abstract][Full Text] [Related]
11. Profiling the T-cell receptor repertoire of patient with pleural tuberculosis by high-throughput sequencing.
Li D; Gao G; Li Z; Sun W; Li X; Chen N; Sun J; Yang Y
Immunol Lett; 2014 Nov; 162(1 Pt A):170-80. PubMed ID: 25173045
[TBL] [Abstract][Full Text] [Related]
12. Analysis of the Repertoire Features of TCR Beta Chain CDR3 in Human by High-Throughput Sequencing.
Hou X; Wang M; Lu C; Xie Q; Cui G; Chen J; Du Y; Dai Y; Diao H
Cell Physiol Biochem; 2016; 39(2):651-67. PubMed ID: 27442436
[TBL] [Abstract][Full Text] [Related]
13. VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium.
Bagaev DV; Vroomans RMA; Samir J; Stervbo U; Rius C; Dolton G; Greenshields-Watson A; Attaf M; Egorov ES; Zvyagin IV; Babel N; Cole DK; Godkin AJ; Sewell AK; Kesmir C; Chudakov DM; Luciani F; Shugay M
Nucleic Acids Res; 2020 Jan; 48(D1):D1057-D1062. PubMed ID: 31588507
[TBL] [Abstract][Full Text] [Related]
14. ImmunoDataAnalyzer: a bioinformatics pipeline for processing barcoded and UMI tagged immunological NGS data.
Vetter J; Schaller S; Heinzel A; Aschauer C; Reindl-Schwaighofer R; Jelencsics K; Hu K; Oberbauer R; Winkler SM
BMC Bioinformatics; 2022 Jan; 23(1):21. PubMed ID: 34991455
[TBL] [Abstract][Full Text] [Related]
15. Annotation of pseudogenic gene segments by massively parallel sequencing of rearranged lymphocyte receptor loci.
Dean J; Emerson RO; Vignali M; Sherwood AM; Rieder MJ; Carlson CS; Robins HS
Genome Med; 2015 Nov; 7():123. PubMed ID: 26596423
[TBL] [Abstract][Full Text] [Related]
16. The presumptive CDR3 regions of both T cell receptor alpha and beta chains determine T cell specificity for myoglobin peptides.
Danska JS; Livingstone AM; Paragas V; Ishihara T; Fathman CG
J Exp Med; 1990 Jul; 172(1):27-33. PubMed ID: 1694219
[TBL] [Abstract][Full Text] [Related]
17. An ultra-sensitive T-cell receptor detection method for TCR-Seq and RNA-Seq data.
Chen SY; Liu CJ; Zhang Q; Guo AY
Bioinformatics; 2020 Aug; 36(15):4255-4262. PubMed ID: 32399561
[TBL] [Abstract][Full Text] [Related]
18. DeepTCR is a deep learning framework for revealing sequence concepts within T-cell repertoires.
Sidhom JW; Larman HB; Pardoll DM; Baras AS
Nat Commun; 2021 Mar; 12(1):1605. PubMed ID: 33707415
[TBL] [Abstract][Full Text] [Related]
19. A comprehensive profiling of T- and B-lymphocyte receptor repertoires from a Chinese-origin rhesus macaque by high-throughput sequencing.
Fu L; Li X; Zhang W; Wang C; Wu J; Yang H; Wang J; Liu X
PLoS One; 2017; 12(8):e0182733. PubMed ID: 28813462
[TBL] [Abstract][Full Text] [Related]
20. T-Cell Repertoire Characterization.
Pasetto A; Buggert M
Methods Mol Biol; 2022; 2574():209-219. PubMed ID: 36087203
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
