214 related articles for article (PubMed ID: 29028884)
1. Protein-protein interaction specificity is captured by contact preferences and interface composition.
Nadalin F; Carbone A
Bioinformatics; 2018 Feb; 34(3):459-468. PubMed ID: 29028884
[TBL] [Abstract][Full Text] [Related]
2. Ranking multiple docking solutions based on the conservation of inter-residue contacts.
Oliva R; Vangone A; Cavallo L
Proteins; 2013 Sep; 81(9):1571-84. PubMed ID: 23609916
[TBL] [Abstract][Full Text] [Related]
3. InterEvScore: a novel coarse-grained interface scoring function using a multi-body statistical potential coupled to evolution.
Andreani J; Faure G; Guerois R
Bioinformatics; 2013 Jul; 29(14):1742-9. PubMed ID: 23652426
[TBL] [Abstract][Full Text] [Related]
4. iScore: a novel graph kernel-based function for scoring protein-protein docking models.
Geng C; Jung Y; Renaud N; Honavar V; Bonvin AMJJ; Xue LC
Bioinformatics; 2020 Jan; 36(1):112-121. PubMed ID: 31199455
[TBL] [Abstract][Full Text] [Related]
5. pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring.
Jiménez-García B; Pons C; Fernández-Recio J
Bioinformatics; 2013 Jul; 29(13):1698-9. PubMed ID: 23661696
[TBL] [Abstract][Full Text] [Related]
6. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
Fernández-Recio J; Abagyan R; Totrov M
Proteins; 2005 Aug; 60(2):308-13. PubMed ID: 15981266
[TBL] [Abstract][Full Text] [Related]
7. PPI4DOCK: large scale assessment of the use of homology models in free docking over more than 1000 realistic targets.
Yu J; Guerois R
Bioinformatics; 2016 Dec; 32(24):3760-3767. PubMed ID: 27551106
[TBL] [Abstract][Full Text] [Related]
8. LightDock: a new multi-scale approach to protein-protein docking.
Jiménez-García B; Roel-Touris J; Romero-Durana M; Vidal M; Jiménez-González D; Fernández-Recio J
Bioinformatics; 2018 Jan; 34(1):49-55. PubMed ID: 28968719
[TBL] [Abstract][Full Text] [Related]
9. A multi-objective optimization approach accurately resolves protein domain architectures.
Bernardes JS; Vieira FR; Zaverucha G; Carbone A
Bioinformatics; 2016 Feb; 32(3):345-53. PubMed ID: 26458889
[TBL] [Abstract][Full Text] [Related]
10. Lessons from (co-)evolution in the docking of proteins and peptides for CAPRI Rounds 28-35.
Yu J; Andreani J; Ochsenbein F; Guerois R
Proteins; 2017 Mar; 85(3):378-390. PubMed ID: 27701780
[TBL] [Abstract][Full Text] [Related]
11. MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers.
Ohue M; Shimoda T; Suzuki S; Matsuzaki Y; Ishida T; Akiyama Y
Bioinformatics; 2014 Nov; 30(22):3281-3. PubMed ID: 25100686
[TBL] [Abstract][Full Text] [Related]
12. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
Schueler-Furman O; Wang C; Baker D
Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
[TBL] [Abstract][Full Text] [Related]
13. Protein-protein and peptide-protein docking and refinement using ATTRACT in CAPRI.
Schindler CE; Chauvot de Beauchêne I; de Vries SJ; Zacharias M
Proteins; 2017 Mar; 85(3):391-398. PubMed ID: 27785830
[TBL] [Abstract][Full Text] [Related]
14. Decrypting protein surfaces by combining evolution, geometry, and molecular docking.
Dequeker C; Laine E; Carbone A
Proteins; 2019 Nov; 87(11):952-965. PubMed ID: 31199528
[TBL] [Abstract][Full Text] [Related]
15. A Novel Index of Contact Frequency from Noise Protein-Protein Interaction Data Help for Accurate Interface Residue Pair Prediction.
Lyu Y; Huang H; Gong X
Interdiscip Sci; 2020 Jun; 12(2):204-216. PubMed ID: 32185690
[TBL] [Abstract][Full Text] [Related]
16. A knowledge-based scoring function to assess quaternary associations of proteins.
Dhawanjewar AS; Roy AA; Madhusudhan MS
Bioinformatics; 2020 Jun; 36(12):3739-3748. PubMed ID: 32246820
[TBL] [Abstract][Full Text] [Related]
17. Development and testing of an automated approach to protein docking.
Tovchigrechko A; Vakser IA
Proteins; 2005 Aug; 60(2):296-301. PubMed ID: 15981259
[TBL] [Abstract][Full Text] [Related]
18. Score_set: a CAPRI benchmark for scoring protein complexes.
Lensink MF; Wodak SJ
Proteins; 2014 Nov; 82(11):3163-9. PubMed ID: 25179222
[TBL] [Abstract][Full Text] [Related]
19. Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions.
Xu X; Qiu L; Yan C; Ma Z; Grinter SZ; Zou X
Proteins; 2017 Mar; 85(3):424-434. PubMed ID: 27802576
[TBL] [Abstract][Full Text] [Related]
20. INTerface Builder: A Fast Protein-Protein Interface Reconstruction Tool.
Dequeker C; Laine E; Carbone A
J Chem Inf Model; 2017 Nov; 57(11):2613-2617. PubMed ID: 28991473
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
