BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

215 related articles for article (PubMed ID: 29028884)

  • 21. INTerface Builder: A Fast Protein-Protein Interface Reconstruction Tool.
    Dequeker C; Laine E; Carbone A
    J Chem Inf Model; 2017 Nov; 57(11):2613-2617. PubMed ID: 28991473
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Docking and scoring protein interactions: CAPRI 2009.
    Lensink MF; Wodak SJ
    Proteins; 2010 Nov; 78(15):3073-84. PubMed ID: 20806235
    [TBL] [Abstract][Full Text] [Related]  

  • 23. DOCKGROUND protein-protein docking decoy set.
    Liu S; Gao Y; Vakser IA
    Bioinformatics; 2008 Nov; 24(22):2634-5. PubMed ID: 18812365
    [TBL] [Abstract][Full Text] [Related]  

  • 24. MEGADOCK: an all-to-all protein-protein interaction prediction system using tertiary structure data.
    Ohue M; Matsuzaki Y; Uchikoga N; Ishida T; Akiyama Y
    Protein Pept Lett; 2014; 21(8):766-78. PubMed ID: 23855673
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Docking and scoring protein complexes: CAPRI 3rd Edition.
    Lensink MF; Méndez R; Wodak SJ
    Proteins; 2007 Dec; 69(4):704-18. PubMed ID: 17918726
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Protein-protein interaction network prediction by using rigid-body docking tools: application to bacterial chemotaxis.
    Matsuzaki Y; Ohue M; Uchikoga N; Akiyama Y
    Protein Pept Lett; 2014; 21(8):790-8. PubMed ID: 23855669
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI.
    Carter P; Lesk VI; Islam SA; Sternberg MJ
    Proteins; 2005 Aug; 60(2):281-8. PubMed ID: 15981271
    [TBL] [Abstract][Full Text] [Related]  

  • 28. CAPRI targets T29-T42: proving ground for new docking procedures.
    Eisenstein M; Ben-Shimon A; Frankenstein Z; Kowalsman N
    Proteins; 2010 Nov; 78(15):3174-81. PubMed ID: 20607697
    [TBL] [Abstract][Full Text] [Related]  

  • 29. SnapDock-template-based docking by Geometric Hashing.
    Estrin M; Wolfson HJ
    Bioinformatics; 2017 Jul; 33(14):i30-i36. PubMed ID: 28881968
    [TBL] [Abstract][Full Text] [Related]  

  • 30. SOFTDOCK application to protein-protein interaction benchmark and CAPRI.
    Li N; Sun Z; Jiang F
    Proteins; 2007 Dec; 69(4):801-8. PubMed ID: 17803216
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Incorporation of flexibility into rigid-body docking: applications in rounds 3-5 of CAPRI.
    Smith GR; Fitzjohn PW; Page CS; Bates PA
    Proteins; 2005 Aug; 60(2):263-8. PubMed ID: 15981258
    [TBL] [Abstract][Full Text] [Related]  

  • 32. On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures.
    Marín-López MA; Planas-Iglesias J; Aguirre-Plans J; Bonet J; Garcia-Garcia J; Fernandez-Fuentes N; Oliva B
    Bioinformatics; 2018 Feb; 34(4):592-598. PubMed ID: 29028891
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Performance of ZDOCK and IRAD in CAPRI rounds 28-34.
    Vreven T; Pierce BG; Borrman TM; Weng Z
    Proteins; 2017 Mar; 85(3):408-416. PubMed ID: 27718275
    [TBL] [Abstract][Full Text] [Related]  

  • 34. pyDockSAXS: protein-protein complex structure by SAXS and computational docking.
    Jiménez-García B; Pons C; Svergun DI; Bernadó P; Fernández-Recio J
    Nucleic Acids Res; 2015 Jul; 43(W1):W356-61. PubMed ID: 25897115
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Protein Interaction Z Score Assessment (PIZSA): an empirical scoring scheme for evaluation of protein-protein interactions.
    Roy AA; Dhawanjewar AS; Sharma P; Singh G; Madhusudhan MS
    Nucleic Acids Res; 2019 Jul; 47(W1):W331-W337. PubMed ID: 31114890
    [TBL] [Abstract][Full Text] [Related]  

  • 36. CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys.
    Hou Q; Lensink MF; Heringa J; Feenstra KA
    PLoS One; 2016; 11(5):e0155251. PubMed ID: 27166787
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Introducing a Clustering Step in a Consensus Approach for the Scoring of Protein-Protein Docking Models.
    Chermak E; De Donato R; Lensink MF; Petta A; Serra L; Scarano V; Cavallo L; Oliva R
    PLoS One; 2016; 11(11):e0166460. PubMed ID: 27846259
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Predicted binding site information improves model ranking in protein docking using experimental and computer-generated target structures.
    Maheshwari S; Brylinski M
    BMC Struct Biol; 2015 Nov; 15():23. PubMed ID: 26597230
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Improved performance in CAPRI round 37 using LZerD docking and template-based modeling with combined scoring functions.
    Peterson LX; Shin WH; Kim H; Kihara D
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):311-320. PubMed ID: 28845596
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Docking to single-domain and multiple-domain proteins: old and new challenges.
    Ben-Zeev E; Kowalsman N; Ben-Shimon A; Segal D; Atarot T; Noivirt O; Shay T; Eisenstein M
    Proteins; 2005 Aug; 60(2):195-201. PubMed ID: 15981268
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.