These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

115 related articles for article (PubMed ID: 29028887)

  • 1. Identification of cancer driver genes in focal genomic aberrations from whole-exome sequencing data.
    Jang H; Lee H
    Bioinformatics; 2018 Feb; 34(3):519-521. PubMed ID: 29028887
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays.
    Hur Y; Lee H
    BMC Bioinformatics; 2011 May; 12():146. PubMed ID: 21569311
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Assigning clinical meaning to somatic and germ-line whole-exome sequencing data in a prospective cancer precision medicine study.
    Ghazani AA; Oliver NM; St Pierre JP; Garofalo A; Rainville IR; Hiller E; Treacy DJ; Rojas-Rudilla V; Wood S; Bair E; Parello M; Huang F; Giannakis M; Wilson FH; Stover EH; Corsello SM; Nguyen T; Rana HQ; Church AJ; Lowenstein C; Cibulskis C; Amin-Mansour A; Heng J; Brais L; Santos A; Bauer P; Waldron A; Lo P; Gorman M; Lydon CA; Welch M; McNamara P; Gabriel S; Sholl LM; Lindeman NI; Garber JE; Joffe S; Van Allen EM; Gray SW; Ja Nne PA; Garraway LA; Wagle N
    Genet Med; 2017 Jul; 19(7):787-795. PubMed ID: 28125075
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Identification of cancer-driver genes in focal genomic alterations from whole genome sequencing data.
    Jang H; Hur Y; Lee H
    Sci Rep; 2016 May; 6():25582. PubMed ID: 27156852
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Performance comparison of two commercial human whole-exome capture systems on formalin-fixed paraffin-embedded lung adenocarcinoma samples.
    Bonfiglio S; Vanni I; Rossella V; Truini A; Lazarevic D; Dal Bello MG; Alama A; Mora M; Rijavec E; Genova C; Cittaro D; Grossi F; Coco S
    BMC Cancer; 2016 Aug; 16(1):692. PubMed ID: 27578032
    [TBL] [Abstract][Full Text] [Related]  

  • 6. EthSEQ: ethnicity annotation from whole exome sequencing data.
    Romanel A; Zhang T; Elemento O; Demichelis F
    Bioinformatics; 2017 Aug; 33(15):2402-2404. PubMed ID: 28369222
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Mosdepth: quick coverage calculation for genomes and exomes.
    Pedersen BS; Quinlan AR
    Bioinformatics; 2018 Mar; 34(5):867-868. PubMed ID: 29096012
    [TBL] [Abstract][Full Text] [Related]  

  • 8. An evaluation of copy number variation detection tools for cancer using whole exome sequencing data.
    Zare F; Dow M; Monteleone N; Hosny A; Nabavi S
    BMC Bioinformatics; 2017 May; 18(1):286. PubMed ID: 28569140
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Whole exome sequencing of lung adenocarcinoma and lung squamous cell carcinoma in one individual: A case report.
    Bai Y; Xu Y; Wang X; Liu Y; Sun C; Guo Y; Cai Y; Shao G; Yang Z; Qiu S; Ma K
    Thorac Cancer; 2020 Aug; 11(8):2361-2364. PubMed ID: 32578383
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Evaluation of whole genome sequencing utility in identifying driver alterations in cancer genome.
    Nagashima T; Yamaguchi K; Urakami K; Shimoda Y; Ohnami S; Ohshima K; Tanabe T; Naruoka A; Kamada F; Serizawa M; Hatakeyama K; Ohnami S; Maruyama K; Mochizuki T; Mizuguchi M; Shiomi A; Ohde Y; Bando E; Sugiura T; Mukaigawa T; Nishimura S; Hirashima Y; Mitsuya K; Yoshikawa S; Kiyohara Y; Tsubosa Y; Katagiri H; Niwakawa M; Takahashi K; Kashiwagi H; Yasunaga Y; Ishida Y; Sugino T; Kenmotsu H; Terashima M; Takahashi M; Uesaka K; Akiyama Y
    Sci Rep; 2024 Oct; 14(1):23898. PubMed ID: 39396060
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Var∣Decrypt: a novel and user-friendly tool to explore and prioritize variants in whole-exome sequencing data.
    Salma M; Alaterre E; Moreaux J; Soler E
    Epigenetics Chromatin; 2023 Jun; 16(1):23. PubMed ID: 37312221
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Somatic Genomics and Clinical Features of Lung Adenocarcinoma: A Retrospective Study.
    Shi J; Hua X; Zhu B; Ravichandran S; Wang M; Nguyen C; Brodie SA; Palleschi A; Alloisio M; Pariscenti G; Jones K; Zhou W; Bouk AJ; Boland J; Hicks B; Risch A; Bennett H; Luke BT; Song L; Duan J; Liu P; Kohno T; Chen Q; Meerzaman D; Marconett C; Laird-Offringa I; Mills I; Caporaso NE; Gail MH; Pesatori AC; Consonni D; Bertazzi PA; Chanock SJ; Landi MT
    PLoS Med; 2016 Dec; 13(12):e1002162. PubMed ID: 27923066
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Measurement of tumor mutational burden (TMB) in routine molecular diagnostics: in silico and real-life analysis of three larger gene panels.
    Endris V; Buchhalter I; Allgäuer M; Rempel E; Lier A; Volckmar AL; Kirchner M; von Winterfeld M; Leichsenring J; Neumann O; Penzel R; Weichert W; Glimm H; Fröhling S; Winter H; Herth F; Thomas M; Schirmacher P; Budczies J; Stenzinger A
    Int J Cancer; 2019 May; 144(9):2303-2312. PubMed ID: 30446996
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Multiresolution correction of GC bias and application to identification of copy number alterations.
    Jang H; Lee H
    Bioinformatics; 2019 Oct; 35(20):3890-3897. PubMed ID: 30865265
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Synggen: fast and data-driven generation of synthetic heterogeneous NGS cancer data.
    Scandino R; Calabrese F; Romanel A
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36484701
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Copy number alterations detected by whole-exome and whole-genome sequencing of esophageal adenocarcinoma.
    Wang X; Li X; Cheng Y; Sun X; Sun X; Self S; Kooperberg C; Dai JY
    Hum Genomics; 2015 Sep; 9(1):22. PubMed ID: 26374103
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ContrastRank: a new method for ranking putative cancer driver genes and classification of tumor samples.
    Tian R; Basu MK; Capriotti E
    Bioinformatics; 2014 Sep; 30(17):i572-8. PubMed ID: 25161249
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Reliability of algorithmic somatic copy number alteration detection from targeted capture data.
    Rieber N; Bohnert R; Ziehm U; Jansen G
    Bioinformatics; 2017 Sep; 33(18):2791-2798. PubMed ID: 28472276
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Bioinformatics Analysis of Whole Exome Sequencing Data.
    Ulintz PJ; Wu W; Gates CM
    Methods Mol Biol; 2019; 1881():277-318. PubMed ID: 30350213
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Rapid and powerful detection of subtle allelic imbalance from exome sequencing data with hapLOHseq.
    San Lucas FA; Sivakumar S; Vattathil S; Fowler J; Vilar E; Scheet P
    Bioinformatics; 2016 Oct; 32(19):3015-7. PubMed ID: 27288500
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.