These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

218 related articles for article (PubMed ID: 29028888)

  • 1. RRDB: a comprehensive and non-redundant benchmark for RNA-RNA docking and scoring.
    Yan Y; Huang SY
    Bioinformatics; 2018 Feb; 34(3):453-458. PubMed ID: 29028888
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A nonredundant structure dataset for benchmarking protein-RNA computational docking.
    Huang SY; Zou X
    J Comput Chem; 2013 Feb; 34(4):311-8. PubMed ID: 23047523
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A non-redundant protein-RNA docking benchmark version 2.0.
    Nithin C; Mukherjee S; Bahadur RP
    Proteins; 2017 Feb; 85(2):256-267. PubMed ID: 27862282
    [TBL] [Abstract][Full Text] [Related]  

  • 4. HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures.
    He J; Wang J; Tao H; Xiao Y; Huang SY
    Nucleic Acids Res; 2019 Jul; 47(W1):W35-W42. PubMed ID: 31114906
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein-ensemble-RNA docking by efficient consideration of protein flexibility through homology models.
    He J; Tao H; Huang SY
    Bioinformatics; 2019 Dec; 35(23):4994-5002. PubMed ID: 31086984
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A protein-RNA docking benchmark (I): nonredundant cases.
    Barik A; C N; P M; Bahadur RP
    Proteins; 2012 Jul; 80(7):1866-71. PubMed ID: 22488669
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Simulated unbound structures for benchmarking of protein docking in the DOCKGROUND resource.
    Kirys T; Ruvinsky AM; Singla D; Tuzikov AV; Kundrotas PJ; Vakser IA
    BMC Bioinformatics; 2015 Jul; 16(1):243. PubMed ID: 26227548
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PPI4DOCK: large scale assessment of the use of homology models in free docking over more than 1000 realistic targets.
    Yu J; Guerois R
    Bioinformatics; 2016 Dec; 32(24):3760-3767. PubMed ID: 27551106
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A protein-RNA docking benchmark (II): extended set from experimental and homology modeling data.
    Pérez-Cano L; Jiménez-García B; Fernández-Recio J
    Proteins; 2012 Jul; 80(7):1872-82. PubMed ID: 22488990
    [TBL] [Abstract][Full Text] [Related]  

  • 10. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
    Gao Y; Douguet D; Tovchigrechko A; Vakser IA
    Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
    [TBL] [Abstract][Full Text] [Related]  

  • 11. 3dRPC: a web server for 3D RNA-protein structure prediction.
    Huang Y; Li H; Xiao Y
    Bioinformatics; 2018 Apr; 34(7):1238-1240. PubMed ID: 29186336
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Pushing the accuracy limit of shape complementarity for protein-protein docking.
    Yan Y; Huang SY
    BMC Bioinformatics; 2019 Dec; 20(Suppl 25):696. PubMed ID: 31874620
    [TBL] [Abstract][Full Text] [Related]  

  • 13. HPEPDOCK: a web server for blind peptide-protein docking based on a hierarchical algorithm.
    Zhou P; Jin B; Li H; Huang SY
    Nucleic Acids Res; 2018 Jul; 46(W1):W443-W450. PubMed ID: 29746661
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Structural and energy determinants in protein-RNA docking.
    Pérez-Cano L; Romero-Durana M; Fernández-Recio J
    Methods; 2017 Apr; 118-119():163-170. PubMed ID: 27816523
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Predicting protein conformational changes for unbound and homology docking: learning from intrinsic and induced flexibility.
    Chen H; Sun Y; Shen Y
    Proteins; 2017 Mar; 85(3):544-556. PubMed ID: 27862345
    [TBL] [Abstract][Full Text] [Related]  

  • 16. HSYMDOCK: a docking web server for predicting the structure of protein homo-oligomers with Cn or Dn symmetry.
    Yan Y; Tao H; Huang SY
    Nucleic Acids Res; 2018 Jul; 46(W1):W423-W431. PubMed ID: 29846641
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Determination of an effective scoring function for RNA-RNA interactions with a physics-based double-iterative method.
    Yan Y; Wen Z; Zhang D; Huang SY
    Nucleic Acids Res; 2018 May; 46(9):e56. PubMed ID: 29506237
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A Membrane Protein Complex Docking Benchmark.
    Koukos PI; Faro I; van Noort CW; Bonvin AMJJ
    J Mol Biol; 2018 Dec; 430(24):5246-5256. PubMed ID: 30414967
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Conformational variability in proteins bound to single-stranded DNA: A new benchmark for new docking perspectives.
    Mias-Lucquin D; Chauvot de Beauchene I
    Proteins; 2022 Mar; 90(3):625-631. PubMed ID: 34617336
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Protein-Protein Docking Benchmark 2.0: an update.
    Mintseris J; Wiehe K; Pierce B; Anderson R; Chen R; Janin J; Weng Z
    Proteins; 2005 Aug; 60(2):214-6. PubMed ID: 15981264
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.