257 related articles for article (PubMed ID: 29029199)
1. A Surrogate Function for One-Dimensional Phylogenetic Likelihoods.
Claywell BC; Dinh V; Fourment M; McCoy CO; Matsen Iv FA
Mol Biol Evol; 2018 Jan; 35(1):242-246. PubMed ID: 29029199
[TBL] [Abstract][Full Text] [Related]
2. The devil in the details: interactions between the branch-length prior and likelihood model affect node support and branch lengths in the phylogeny of the Psoraceae.
Ekman S; Blaalid R
Syst Biol; 2011 Jul; 60(4):541-61. PubMed ID: 21436107
[TBL] [Abstract][Full Text] [Related]
3. Tail paradox, partial identifiability, and influential priors in Bayesian branch length inference.
Rannala B; Zhu T; Yang Z
Mol Biol Evol; 2012 Jan; 29(1):325-35. PubMed ID: 21890479
[TBL] [Abstract][Full Text] [Related]
4. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
5. Improving marginal likelihood estimation for Bayesian phylogenetic model selection.
Xie W; Lewis PO; Fan Y; Kuo L; Chen MH
Syst Biol; 2011 Mar; 60(2):150-60. PubMed ID: 21187451
[TBL] [Abstract][Full Text] [Related]
6. Bayesian inference of phylogeny and its impact on evolutionary biology.
Huelsenbeck JP; Ronquist F; Nielsen R; Bollback JP
Science; 2001 Dec; 294(5550):2310-4. PubMed ID: 11743192
[TBL] [Abstract][Full Text] [Related]
7. Approximate likelihood calculation on a phylogeny for Bayesian estimation of divergence times.
dos Reis M; Yang Z
Mol Biol Evol; 2011 Jul; 28(7):2161-72. PubMed ID: 21310946
[TBL] [Abstract][Full Text] [Related]
8. bModelTest: Bayesian phylogenetic site model averaging and model comparison.
Bouckaert RR; Drummond AJ
BMC Evol Biol; 2017 Feb; 17(1):42. PubMed ID: 28166715
[TBL] [Abstract][Full Text] [Related]
9. Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution.
Baele G; Lemey P; Vansteelandt S
BMC Bioinformatics; 2013 Mar; 14():85. PubMed ID: 23497171
[TBL] [Abstract][Full Text] [Related]
10. An Efficient Independence Sampler for Updating Branches in Bayesian Markov chain Monte Carlo Sampling of Phylogenetic Trees.
Aberer AJ; Stamatakis A; Ronquist F
Syst Biol; 2016 Jan; 65(1):161-76. PubMed ID: 26231183
[TBL] [Abstract][Full Text] [Related]
11. Phylogenetic MCMC algorithms are misleading on mixtures of trees.
Mossel E; Vigoda E
Science; 2005 Sep; 309(5744):2207-9. PubMed ID: 16195459
[TBL] [Abstract][Full Text] [Related]
12. Bayesian gene/species tree reconciliation and orthology analysis using MCMC.
Arvestad L; Berglund AC; Lagergren J; Sennblad B
Bioinformatics; 2003; 19 Suppl 1():i7-15. PubMed ID: 12855432
[TBL] [Abstract][Full Text] [Related]
13. Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.
Huelsenbeck JP; Larget B; Alfaro ME
Mol Biol Evol; 2004 Jun; 21(6):1123-33. PubMed ID: 15034130
[TBL] [Abstract][Full Text] [Related]
14. Identifiability of parameters in MCMC Bayesian inference of phylogeny.
Rannala B
Syst Biol; 2002 Oct; 51(5):754-60. PubMed ID: 12396589
[TBL] [Abstract][Full Text] [Related]
15. Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data.
Waddell PJ; Kishino H; Ota R
Genome Inform; 2002; 13():82-92. PubMed ID: 14571377
[TBL] [Abstract][Full Text] [Related]
16. Empirical and hierarchical Bayesian estimation of ancestral states.
Huelsenbeck JP; Bollback JP
Syst Biol; 2001 Jun; 50(3):351-66. PubMed ID: 12116580
[TBL] [Abstract][Full Text] [Related]
17. RWTY (R We There Yet): An R Package for Examining Convergence of Bayesian Phylogenetic Analyses.
Warren DL; Geneva AJ; Lanfear R
Mol Biol Evol; 2017 Apr; 34(4):1016-1020. PubMed ID: 28087773
[TBL] [Abstract][Full Text] [Related]
18. Hessian calculation for phylogenetic likelihood based on the pruning algorithm and its applications.
Kenney T; Gu H
Stat Appl Genet Mol Biol; 2012 Sep; 11(4):Article 14. PubMed ID: 23023698
[TBL] [Abstract][Full Text] [Related]
19. Improving the performance of Bayesian phylogenetic inference under relaxed clock models.
Zhang R; Drummond A
BMC Evol Biol; 2020 May; 20(1):54. PubMed ID: 32410614
[TBL] [Abstract][Full Text] [Related]
20. Unraveling the evolutionary radiation of the thoracican barnacles using molecular and morphological evidence: a comparison of several divergence time estimation approaches.
Pérez-Losada M; Høeg JT; Crandall KA
Syst Biol; 2004 Apr; 53(2):244-64. PubMed ID: 15205051
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
