175 related articles for article (PubMed ID: 29035579)
1. Beta-Barrel Detection for Medium Resolution Cryo-Electron Microscopy Density Maps Using Genetic Algorithms and Ray Tracing.
Ng A; Si D
J Comput Biol; 2018 Mar; 25(3):326-336. PubMed ID: 29035579
[TBL] [Abstract][Full Text] [Related]
2. Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density Maps.
Si D; He J
Biomed Res Int; 2017; 2017():1793213. PubMed ID: 28164115
[TBL] [Abstract][Full Text] [Related]
3. Combining image processing and modeling to generate traces of beta-strands from cryo-EM density images of beta-barrels.
Si D; He J
Annu Int Conf IEEE Eng Med Biol Soc; 2014; 2014():3941-4. PubMed ID: 25570854
[TBL] [Abstract][Full Text] [Related]
4. De Novo modeling in cryo-EM density maps with Pathwalking.
Chen M; Baldwin PR; Ludtke SJ; Baker ML
J Struct Biol; 2016 Dec; 196(3):289-298. PubMed ID: 27436409
[TBL] [Abstract][Full Text] [Related]
5. A machine learning approach for the identification of protein secondary structure elements from electron cryo-microscopy density maps.
Si D; Ji S; Nasr KA; He J
Biopolymers; 2012 Sep; 97(9):698-708. PubMed ID: 22696406
[TBL] [Abstract][Full Text] [Related]
6. Tracing beta strands using StrandTwister from cryo-EM density maps at medium resolutions.
Si D; He J
Structure; 2014 Nov; 22(11):1665-76. PubMed ID: 25308866
[TBL] [Abstract][Full Text] [Related]
7. A blind deconvolution approach for improving the resolution of cryo-EM density maps.
Hirsch M; Schölkopf B; Habeck M
J Comput Biol; 2011 Mar; 18(3):335-46. PubMed ID: 21385038
[TBL] [Abstract][Full Text] [Related]
8. Edged watershed segmentation: a semi-interactive algorithm for segmentation of low-resolution maps from electron cryomicroscopy.
Baker LA; Rubinstein JL
J Struct Biol; 2011 Oct; 176(1):127-32. PubMed ID: 21763426
[TBL] [Abstract][Full Text] [Related]
9. Three-Dimensional Graph Matching to Identify Secondary Structure Correspondence of Medium-Resolution Cryo-EM Density Maps.
Behkamal B; Naghibzadeh M; Saberi MR; Tehranizadeh ZA; Pagnani A; Al Nasr K
Biomolecules; 2021 Nov; 11(12):. PubMed ID: 34944417
[TBL] [Abstract][Full Text] [Related]
10. Solving the α-helix correspondence problem at medium-resolution Cryo-EM maps through modeling and 3D matching.
Behkamal B; Naghibzadeh M; Pagnani A; Saberi MR; Al Nasr K
J Mol Graph Model; 2021 Mar; 103():107815. PubMed ID: 33338845
[TBL] [Abstract][Full Text] [Related]
11. Refinement of Atomic Structures Against cryo-EM Maps.
Murshudov GN
Methods Enzymol; 2016; 579():277-305. PubMed ID: 27572731
[TBL] [Abstract][Full Text] [Related]
12. Protein secondary structure detection in intermediate-resolution cryo-EM maps using deep learning.
Maddhuri Venkata Subramaniya SR; Terashi G; Kihara D
Nat Methods; 2019 Sep; 16(9):911-917. PubMed ID: 31358979
[TBL] [Abstract][Full Text] [Related]
13. Deep Learning to Predict Protein Backbone Structure from High-Resolution Cryo-EM Density Maps.
Si D; Moritz SA; Pfab J; Hou J; Cao R; Wang L; Wu T; Cheng J
Sci Rep; 2020 Mar; 10(1):4282. PubMed ID: 32152330
[TBL] [Abstract][Full Text] [Related]
14. A fragment based method for modeling of protein segments into cryo-EM density maps.
Ismer J; Rose AS; Tiemann JKS; Hildebrand PW
BMC Bioinformatics; 2017 Nov; 18(1):475. PubMed ID: 29132296
[TBL] [Abstract][Full Text] [Related]
15. Improving the Accuracy of Fitted Atomic Models in Cryo-EM Density Maps of Protein Assemblies Using Evolutionary Information from Aligned Homologous Proteins.
Rakesh R; Srinivasan N
Methods Mol Biol; 2016; 1415():193-209. PubMed ID: 27115634
[TBL] [Abstract][Full Text] [Related]
16. EMatch: discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps.
Lasker K; Dror O; Shatsky M; Nussinov R; Wolfson HJ
IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(1):28-39. PubMed ID: 17277411
[TBL] [Abstract][Full Text] [Related]
17. Comparing an Atomic Model or Structure to a Corresponding Cryo-electron Microscopy Image at the Central Axis of a Helix.
Zeil S; Kovacs J; Wriggers W; He J
J Comput Biol; 2017 Jan; 24(1):52-67. PubMed ID: 27936925
[TBL] [Abstract][Full Text] [Related]
18. Iterative Molecular Dynamics-Rosetta Membrane Protein Structure Refinement Guided by Cryo-EM Densities.
Leelananda SP; Lindert S
J Chem Theory Comput; 2017 Oct; 13(10):5131-5145. PubMed ID: 28949136
[TBL] [Abstract][Full Text] [Related]
19. Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations.
Jolley CC; Wells SA; Fromme P; Thorpe MF
Biophys J; 2008 Mar; 94(5):1613-21. PubMed ID: 17993504
[TBL] [Abstract][Full Text] [Related]
20. An automatic method for predicting transmembrane protein structures using cryo-EM and evolutionary data.
Fleishman SJ; Harrington S; Friesner RA; Honig B; Ben-Tal N
Biophys J; 2004 Nov; 87(5):3448-59. PubMed ID: 15339802
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
