BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

173 related articles for article (PubMed ID: 29036499)

  • 1. VCF-Explorer: filtering and analysing whole genome VCF files.
    Akgün M; Demirci H
    Bioinformatics; 2017 Nov; 33(21):3468-3470. PubMed ID: 29036499
    [TBL] [Abstract][Full Text] [Related]  

  • 2. VCF-Server: A web-based visualization tool for high-throughput variant data mining and management.
    Jiang J; Gu J; Zhao T; Lu H
    Mol Genet Genomic Med; 2019 Jul; 7(7):e00641. PubMed ID: 31127704
    [TBL] [Abstract][Full Text] [Related]  

  • 3. VCF-Miner: GUI-based application for mining variants and annotations stored in VCF files.
    Hart SN; Duffy P; Quest DJ; Hossain A; Meiners MA; Kocher JP
    Brief Bioinform; 2016 Mar; 17(2):346-51. PubMed ID: 26210358
    [TBL] [Abstract][Full Text] [Related]  

  • 4. 123VCF: an intuitive and efficient tool for filtering VCF files.
    Eidi M; Abdolalizadeh S; Moeini S; Garshasbi M; Zahiri J
    BMC Bioinformatics; 2024 Feb; 25(1):68. PubMed ID: 38350858
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SeqArray-a storage-efficient high-performance data format for WGS variant calls.
    Zheng X; Gogarten SM; Lawrence M; Stilp A; Conomos MP; Weir BS; Laurie C; Levine D
    Bioinformatics; 2017 Aug; 33(15):2251-2257. PubMed ID: 28334390
    [TBL] [Abstract][Full Text] [Related]  

  • 6. FMFilter: A fast model based variant filtering tool.
    Akgün M; Faruk Gerdan Ö; Görmez Z; Demirci H
    J Biomed Inform; 2016 Apr; 60():319-27. PubMed ID: 26925517
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat.
    Wang W; Wang Z; Li X; Ni Z; Hu Z; Xin M; Peng H; Yao Y; Sun Q; Guo W
    Gigascience; 2020 Jun; 9(6):. PubMed ID: 32501478
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CircosVCF: circos visualization of whole-genome sequence variations stored in VCF files.
    Drori E; Levy D; Smirin-Yosef P; Rahimi O; Salmon-Divon M
    Bioinformatics; 2017 May; 33(9):1392-1393. PubMed ID: 28453675
    [TBL] [Abstract][Full Text] [Related]  

  • 9. re-Searcher: GUI-based bioinformatics tool for simplified genomics data mining of VCF files.
    Karabayev D; Molkenov A; Yerulanuly K; Kabimoldayev I; Daniyarov A; Sharip A; Seisenova A; Zhumadilov Z; Kairov U
    PeerJ; 2021; 9():e11333. PubMed ID: 33987016
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The variant call format and VCFtools.
    Danecek P; Auton A; Abecasis G; Albers CA; Banks E; DePristo MA; Handsaker RE; Lunter G; Marth GT; Sherry ST; McVean G; Durbin R;
    Bioinformatics; 2011 Aug; 27(15):2156-8. PubMed ID: 21653522
    [TBL] [Abstract][Full Text] [Related]  

  • 11. VCF.Filter: interactive prioritization of disease-linked genetic variants from sequencing data.
    Müller H; Jimenez-Heredia R; Krolo A; Hirschmugl T; Dmytrus J; Boztug K; Bock C
    Nucleic Acids Res; 2017 Jul; 45(W1):W567-W572. PubMed ID: 28520890
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BrowseVCF: a web-based application and workflow to quickly prioritize disease-causative variants in VCF files.
    Salatino S; Ramraj V
    Brief Bioinform; 2017 Sep; 18(5):774-779. PubMed ID: 27373737
    [TBL] [Abstract][Full Text] [Related]  

  • 13. VEF: a variant filtering tool based on ensemble methods.
    Zhang C; Ochoa I
    Bioinformatics; 2020 Apr; 36(8):2328-2336. PubMed ID: 31873730
    [TBL] [Abstract][Full Text] [Related]  

  • 14. h5vc: scalable nucleotide tallies with HDF5.
    Pyl PT; Gehring J; Fischer B; Huber W
    Bioinformatics; 2014 May; 30(10):1464-6. PubMed ID: 24451629
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Improved VCF normalization for accurate VCF comparison.
    Bayat A; Gaëta B; Ignjatovic A; Parameswaran S
    Bioinformatics; 2017 Apr; 33(7):964-970. PubMed ID: 27993787
    [TBL] [Abstract][Full Text] [Related]  

  • 16. genozip: a fast and efficient compression tool for VCF files.
    Lan D; Tobler R; Souilmi Y; Llamas B
    Bioinformatics; 2020 Jul; 36(13):4091-4092. PubMed ID: 32407471
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Sparse Project VCF: efficient encoding of population genotype matrices.
    Lin MF; Bai X; Salerno WJ; Reid JG
    Bioinformatics; 2021 Apr; 36(22-23):5537-5538. PubMed ID: 33300997
    [TBL] [Abstract][Full Text] [Related]  

  • 18. VCF-kit: assorted utilities for the variant call format.
    Cook DE; Andersen EC
    Bioinformatics; 2017 May; 33(10):1581-1582. PubMed ID: 28093408
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SeqMule: automated pipeline for analysis of human exome/genome sequencing data.
    Guo Y; Ding X; Shen Y; Lyon GJ; Wang K
    Sci Rep; 2015 Sep; 5():14283. PubMed ID: 26381817
    [TBL] [Abstract][Full Text] [Related]  

  • 20. myVCF: a desktop application for high-throughput mutations data management.
    Pietrelli A; Valenti L
    Bioinformatics; 2017 Nov; 33(22):3676-3678. PubMed ID: 29036298
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.