These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
6. BioCIDER: a Contextualisation InDEx for biological Resources discovery. Horro C; Cook M; Attwood TK; Brazas MD; Hancock JM; Palagi P; Corpas M; Jimenez R Bioinformatics; 2017 Aug; 33(16):2607-2608. PubMed ID: 28407033 [TBL] [Abstract][Full Text] [Related]
7. TnT: a set of libraries for visualizing trees and track-based annotations for the web. Pignatelli M Bioinformatics; 2016 Aug; 32(16):2524-5. PubMed ID: 27153646 [TBL] [Abstract][Full Text] [Related]
8. PDBImages: a command-line tool for automated macromolecular structure visualization. Midlik A; Nair S; Anyango S; Deshpande M; Sehnal D; Varadi M; Velankar S Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 38085238 [TBL] [Abstract][Full Text] [Related]
9. Interactive network visualization in Jupyter notebooks: visJS2jupyter. Rosenthal SB; Len J; Webster M; Gary A; Birmingham A; Fisch KM Bioinformatics; 2018 Jan; 34(1):126-128. PubMed ID: 28968701 [TBL] [Abstract][Full Text] [Related]
10. NGLview-interactive molecular graphics for Jupyter notebooks. Nguyen H; Case DA; Rose AS Bioinformatics; 2018 Apr; 34(7):1241-1242. PubMed ID: 29236954 [TBL] [Abstract][Full Text] [Related]
12. Phylo.io: Interactive Viewing and Comparison of Large Phylogenetic Trees on the Web. Robinson O; Dylus D; Dessimoz C Mol Biol Evol; 2016 Aug; 33(8):2163-6. PubMed ID: 27189561 [TBL] [Abstract][Full Text] [Related]
15. Cytoscape.js: a graph theory library for visualisation and analysis. Franz M; Lopes CT; Huck G; Dong Y; Sumer O; Bader GD Bioinformatics; 2016 Jan; 32(2):309-11. PubMed ID: 26415722 [TBL] [Abstract][Full Text] [Related]
16. Dasty3, a WEB framework for DAS. Villaveces JM; Jimenez RC; Garcia LJ; Salazar GA; Gel B; Mulder N; Martin M; Garcia A; Hermjakob H Bioinformatics; 2011 Sep; 27(18):2616-7. PubMed ID: 21798964 [TBL] [Abstract][Full Text] [Related]
17. The EMBL-EBI bioinformatics web and programmatic tools framework. Li W; Cowley A; Uludag M; Gur T; McWilliam H; Squizzato S; Park YM; Buso N; Lopez R Nucleic Acids Res; 2015 Jul; 43(W1):W580-4. PubMed ID: 25845596 [TBL] [Abstract][Full Text] [Related]
18. Reactome diagram viewer: data structures and strategies to boost performance. Fabregat A; Sidiropoulos K; Viteri G; Marin-Garcia P; Ping P; Stein L; D'Eustachio P; Hermjakob H Bioinformatics; 2018 Apr; 34(7):1208-1214. PubMed ID: 29186351 [TBL] [Abstract][Full Text] [Related]
19. Searching and Extracting Data from the EMBL-EBI Complex Portal. Meldal BHM; Orchard S Methods Mol Biol; 2018; 1764():377-390. PubMed ID: 29605928 [TBL] [Abstract][Full Text] [Related]