85 related articles for article (PubMed ID: 29043327)
1. Stacking interactions involving non-Watson-Crick basepairs: dispersion corrected density functional theory studies.
Maiti S; Bhattacharyya D
Phys Chem Chem Phys; 2017 Nov; 19(42):28718-28730. PubMed ID: 29043327
[TBL] [Abstract][Full Text] [Related]
2. Stacking geometry between two sheared Watson-Crick basepairs: Computational chemistry and bioinformatics based prediction.
Maiti S; Mukherjee D; Roy P; Chakrabarti J; Bhattacharyya D
Biochim Biophys Acta Gen Subj; 2020 Jul; 1864(7):129600. PubMed ID: 32179130
[TBL] [Abstract][Full Text] [Related]
3. Stacking geometry for non-canonical G:U wobble base pair containing dinucleotide sequences in RNA: dispersion-corrected DFT-D study.
Mondal M; Mukherjee S; Halder S; Bhattacharyya D
Biopolymers; 2015 Jun; 103(6):328-38. PubMed ID: 25652776
[TBL] [Abstract][Full Text] [Related]
4. Energy hyperspace for stacking interaction in AU/AU dinucleotide step: Dispersion-corrected density functional theory study.
Mukherjee S; Kailasam S; Bansal M; Bhattacharyya D
Biopolymers; 2014 Jan; 101(1):107-20. PubMed ID: 23722519
[TBL] [Abstract][Full Text] [Related]
5. Effect of Watson-Crick and Hoogsteen base pairing on the conformational stability of C8-phenoxyl-2'-deoxyguanosine adducts.
Millen AL; Churchill CD; Manderville RA; Wetmore SD
J Phys Chem B; 2010 Oct; 114(40):12995-3004. PubMed ID: 20853889
[TBL] [Abstract][Full Text] [Related]
6. Sequence-dependent DNA structure: the role of the sugar-phosphate backbone.
Packer MJ; Hunter CA
J Mol Biol; 1998 Jul; 280(3):407-20. PubMed ID: 9665845
[TBL] [Abstract][Full Text] [Related]
7. True stabilization energies for the optimal planar hydrogen-bonded and stacked structures of guanine...cytosine, adenine...thymine, and their 9- and 1-methyl derivatives: complete basis set calculations at the MP2 and CCSD(T) levels and comparison with experiment.
Jurecka P; Hobza P
J Am Chem Soc; 2003 Dec; 125(50):15608-13. PubMed ID: 14664608
[TBL] [Abstract][Full Text] [Related]
8. How Does Mg
Halder A; Roy R; Bhattacharyya D; Mitra A
Biophys J; 2017 Jul; 113(2):277-289. PubMed ID: 28506525
[TBL] [Abstract][Full Text] [Related]
9. Hybrid simulation approach incorporating microscopic interaction along with rigid body degrees of freedom for stacking between base pairs.
Mondal M; Halder S; Chakrabarti J; Bhattacharyya D
Biopolymers; 2016 Apr; 105(4):212-26. PubMed ID: 26600167
[TBL] [Abstract][Full Text] [Related]
10. Sequence dependent variations in RNA duplex are related to non-canonical hydrogen bond interactions in dinucleotide steps.
Kailasam S; Bhattacharyya D; Bansal M
BMC Res Notes; 2014 Feb; 7():83. PubMed ID: 24502340
[TBL] [Abstract][Full Text] [Related]
11. Stacking interactions in RNA and DNA: Roll-slide energy hyperspace for ten unique dinucleotide steps.
Mukherjee S; Kailasam S; Bansal M; Bhattacharyya D
Biopolymers; 2015 Mar; 103(3):134-47. PubMed ID: 25257334
[TBL] [Abstract][Full Text] [Related]
12. Principles of RNA base pairing: structures and energies of the trans Watson-Crick/sugar edge base pairs.
Sponer JE; Spackova N; Leszczynski J; Sponer J
J Phys Chem B; 2005 Jun; 109(22):11399-410. PubMed ID: 16852393
[TBL] [Abstract][Full Text] [Related]
13. Structure and energy of non-canonical basepairs: comparison of various computational chemistry methods with crystallographic ensembles.
Panigrahi S; Pal R; Bhattacharyya D
J Biomol Struct Dyn; 2011 Dec; 29(3):541-56. PubMed ID: 22066539
[TBL] [Abstract][Full Text] [Related]
14. Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs.
Burkard ME; Kierzek R; Turner DH
J Mol Biol; 1999 Jul; 290(5):967-82. PubMed ID: 10438596
[TBL] [Abstract][Full Text] [Related]
15. DNA base dimers are stabilized by hydrogen-bonding interactions including non-Watson-Crick pairing near graphite surfaces.
Shankar A; Jagota A; Mittal J
J Phys Chem B; 2012 Oct; 116(40):12088-94. PubMed ID: 22967176
[TBL] [Abstract][Full Text] [Related]
16. Structural stability of tandemly occurring noncanonical basepairs within double helical fragments: molecular dynamics studies of functional RNA.
Halder S; Bhattacharyya D
J Phys Chem B; 2010 Nov; 114(44):14028-40. PubMed ID: 20945881
[TBL] [Abstract][Full Text] [Related]
17. Unveiling the Intermolecular Interactions between Drug 5-Fluorouracil and Watson-Crick/Hoogsteen Base Pairs: A Computational Analysis.
Venkataramanan NS; Suvitha A; Sahara R
ACS Omega; 2024 Jun; 9(23):24831-24844. PubMed ID: 38882136
[TBL] [Abstract][Full Text] [Related]
18. The first example of a Hoogsteen base-paired DNA duplex in dynamic equilibrium with a Watson-Crick base-paired duplex--a structural (NMR), kinetic and thermodynamic study.
Isaksson J; Zamaratski E; Maltseva TV; Agback P; Kumar A; Chattopadhyaya J
J Biomol Struct Dyn; 2001 Jun; 18(6):783-806. PubMed ID: 11444368
[TBL] [Abstract][Full Text] [Related]
19. Radical-radical interactions among oxidized guanine bases including guanine radical cation and dehydrogenated guanine radicals.
Zhao J; Wang M; Yang H; Zhang M; Liu P; Bu Y
J Phys Chem B; 2013 Sep; 117(37):10698-710. PubMed ID: 23964815
[TBL] [Abstract][Full Text] [Related]
20. Quantum chemical studies of structures and binding in noncanonical RNA base pairs: the trans Watson-Crick:Watson-Crick family.
Sharma P; Mitra A; Sharma S; Singh H; Bhattacharyya D
J Biomol Struct Dyn; 2008 Jun; 25(6):709-32. PubMed ID: 18399704
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
