221 related articles for article (PubMed ID: 29045866)
1. How Many Protein Sequences Fold to a Given Structure? A Coevolutionary Analysis.
Tian P; Best RB
Biophys J; 2017 Oct; 113(8):1719-1730. PubMed ID: 29045866
[TBL] [Abstract][Full Text] [Related]
2. Emergence of preferred structures in a simple model of protein folding.
Li H; Helling R; Tang C; Wingreen N
Science; 1996 Aug; 273(5275):666-9. PubMed ID: 8662562
[TBL] [Abstract][Full Text] [Related]
3. Super folds, networks, and barriers.
Burke S; Elber R
Proteins; 2012 Feb; 80(2):463-70. PubMed ID: 22095563
[TBL] [Abstract][Full Text] [Related]
4. The designability of protein structures.
Helling R; Li H; Mélin R; Miller J; Wingreen N; Zeng C; Tang C
J Mol Graph Model; 2001; 19(1):157-67. PubMed ID: 11381527
[TBL] [Abstract][Full Text] [Related]
5. Exploration of the relationship between topology and designability of conformations.
Leelananda SP; Towfic F; Jernigan RL; Kloczkowski A
J Chem Phys; 2011 Jun; 134(23):235101. PubMed ID: 21702580
[TBL] [Abstract][Full Text] [Related]
6. Physical origins of protein superfamilies.
Zeldovich KB; Berezovsky IN; Shakhnovich EI
J Mol Biol; 2006 Apr; 357(4):1335-43. PubMed ID: 16483605
[TBL] [Abstract][Full Text] [Related]
7. Evolutionary information for specifying a protein fold.
Socolich M; Lockless SW; Russ WP; Lee H; Gardner KH; Ranganathan R
Nature; 2005 Sep; 437(7058):512-8. PubMed ID: 16177782
[TBL] [Abstract][Full Text] [Related]
8. Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection.
Morcos F; Schafer NP; Cheng RR; Onuchic JN; Wolynes PG
Proc Natl Acad Sci U S A; 2014 Aug; 111(34):12408-13. PubMed ID: 25114242
[TBL] [Abstract][Full Text] [Related]
9. Size and structure of the sequence space of repeat proteins.
Marchi J; Galpern EA; Espada R; Ferreiro DU; Walczak AM; Mora T
PLoS Comput Biol; 2019 Aug; 15(8):e1007282. PubMed ID: 31415557
[TBL] [Abstract][Full Text] [Related]
10. Emergence of highly designable protein-backbone conformations in an off-lattice model.
Miller J; Zeng C; Wingreen NS; Tang C
Proteins; 2002 Jun; 47(4):506-12. PubMed ID: 12001229
[TBL] [Abstract][Full Text] [Related]
11. Selecting sequences that fold into a defined 3D structure: A new approach for protein design based on molecular dynamics and energetics.
Morra G; Baragli C; Colombo G
Biophys Chem; 2010 Feb; 146(2-3):76-84. PubMed ID: 19926206
[TBL] [Abstract][Full Text] [Related]
12. Designability of protein structures: a lattice-model study using the Miyazawa-Jernigan matrix.
Li H; Tang C; Wingreen NS
Proteins; 2002 Nov; 49(3):403-12. PubMed ID: 12360530
[TBL] [Abstract][Full Text] [Related]
13. Statistical theory of protein sequence design by random mutation.
Bhattacherjee A; Biswas P
J Phys Chem B; 2009 Apr; 113(16):5520-7. PubMed ID: 19323540
[TBL] [Abstract][Full Text] [Related]
14. Statistical theory of combinatorial libraries of folding proteins: energetic discrimination of a target structure.
Zou J; Saven JG
J Mol Biol; 2000 Feb; 296(1):281-94. PubMed ID: 10656832
[TBL] [Abstract][Full Text] [Related]
15. Geometric and statistical properties of the mean-field hydrophobic-polar model, the large-small model, and real protein sequences.
Shih CT; Su ZY; Gwan JF; Hao BL; Hsieh CH; Lo JL; Lee HC
Phys Rev E Stat Nonlin Soft Matter Phys; 2002 Apr; 65(4 Pt 1):041923. PubMed ID: 12005889
[TBL] [Abstract][Full Text] [Related]
16. Evolution and similarity evaluation of protein structures in contact map space.
Gupta N; Mangal N; Biswas S
Proteins; 2005 May; 59(2):196-204. PubMed ID: 15726585
[TBL] [Abstract][Full Text] [Related]
17. Sequence and structure space model of protein divergence driven by point mutations.
Arodź T; Płonka PM
J Theor Biol; 2013 Aug; 330():1-8. PubMed ID: 23541620
[TBL] [Abstract][Full Text] [Related]
18. Effect of alphabet size and foldability requirements on protein structure designability.
Buchler NE; Goldstein RA
Proteins; 1999 Jan; 34(1):113-24. PubMed ID: 10336377
[TBL] [Abstract][Full Text] [Related]
19. Designing amino acid sequences to fold with good hydrophobic cores.
Sun S; Brem R; Chan HS; Dill KA
Protein Eng; 1995 Dec; 8(12):1205-13. PubMed ID: 8869633
[TBL] [Abstract][Full Text] [Related]
20. Local Interactions That Contribute Minimal Frustration Determine Foldability.
Zou T; Woodrum BW; Halloran N; Campitelli P; Bobkov AA; Ghirlanda G; Ozkan SB
J Phys Chem B; 2021 Mar; 125(10):2617-2626. PubMed ID: 33687216
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
