534 related articles for article (PubMed ID: 29048467)
1. Identification of copy number variations and translocations in cancer cells from Hi-C data.
Chakraborty A; Ay F
Bioinformatics; 2018 Jan; 34(2):338-345. PubMed ID: 29048467
[TBL] [Abstract][Full Text] [Related]
2. Identification and utilization of copy number information for correcting Hi-C contact map of cancer cell lines.
Khalil AIS; Muzaki SRBM; Chattopadhyay A; Sanyal A
BMC Bioinformatics; 2020 Nov; 21(1):506. PubMed ID: 33160308
[TBL] [Abstract][Full Text] [Related]
3. Hi-C analysis of genomic contacts revealed karyotype abnormalities in chicken HD3 cell line.
Maslova A; Plotnikov V; Nuriddinov M; Gridina M; Fishman V; Krasikova A
BMC Genomics; 2023 Feb; 24(1):66. PubMed ID: 36750787
[TBL] [Abstract][Full Text] [Related]
4. 3D disorganization and rearrangement of genome provide insights into pathogenesis of NAFLD by integrated Hi-C, Nanopore, and RNA sequencing.
Xu L; Yin L; Qi Y; Tan X; Gao M; Peng J
Acta Pharm Sin B; 2021 Oct; 11(10):3150-3164. PubMed ID: 34729306
[TBL] [Abstract][Full Text] [Related]
5. Chromosomal Translocations Detection in Cancer Cells Using Chromosomal Conformation Capture Data.
Adeel MM; Rehman K; Zhang Y; Arega Y; Li G
Genes (Basel); 2022 Jun; 13(7):. PubMed ID: 35885953
[TBL] [Abstract][Full Text] [Related]
6. A maximum likelihood algorithm for reconstructing 3D structures of human chromosomes from chromosomal contact data.
Oluwadare O; Zhang Y; Cheng J
BMC Genomics; 2018 Feb; 19(1):161. PubMed ID: 29471801
[TBL] [Abstract][Full Text] [Related]
7. 3D genome of multiple myeloma reveals spatial genome disorganization associated with copy number variations.
Wu P; Li T; Li R; Jia L; Zhu P; Liu Y; Chen Q; Tang D; Yu Y; Li C
Nat Commun; 2017 Dec; 8(1):1937. PubMed ID: 29203764
[TBL] [Abstract][Full Text] [Related]
8. Large-scale mammalian genome rearrangements coincide with chromatin interactions.
Swenson KM; Blanchette M
Bioinformatics; 2019 Jul; 35(14):i117-i126. PubMed ID: 31510664
[TBL] [Abstract][Full Text] [Related]
9. ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data.
Oluwadare O; Cheng J
BMC Bioinformatics; 2017 Nov; 18(1):480. PubMed ID: 29137603
[TBL] [Abstract][Full Text] [Related]
10. HiNT: a computational method for detecting copy number variations and translocations from Hi-C data.
Wang S; Lee S; Chu C; Jain D; Kerpedjiev P; Nelson GM; Walsh JM; Alver BH; Park PJ
Genome Biol; 2020 Mar; 21(1):73. PubMed ID: 32293513
[TBL] [Abstract][Full Text] [Related]
11. Nucleome Analysis Reveals Structure-Function Relationships for Colon Cancer.
Seaman L; Chen H; Brown M; Wangsa D; Patterson G; Camps J; Omenn GS; Ried T; Rajapakse I
Mol Cancer Res; 2017 Jul; 15(7):821-830. PubMed ID: 28258094
[TBL] [Abstract][Full Text] [Related]
12. Iteratively improving Hi-C experiments one step at a time.
Golloshi R; Sanders JT; McCord RP
Methods; 2018 Jun; 142():47-58. PubMed ID: 29723572
[TBL] [Abstract][Full Text] [Related]
13. hicGAN infers super resolution Hi-C data with generative adversarial networks.
Liu Q; Lv H; Jiang R
Bioinformatics; 2019 Jul; 35(14):i99-i107. PubMed ID: 31510693
[TBL] [Abstract][Full Text] [Related]
14. CNV-BAC: Copy number Variation Detection in Bacterial Circular Genome.
Wu L; Wang H; Xia Y; Xi R
Bioinformatics; 2020 Jun; 36(12):3890-3891. PubMed ID: 32219377
[TBL] [Abstract][Full Text] [Related]
15. HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data.
Jain D; Chu C; Alver BH; Lee S; Lee EA; Park PJ
Bioinformatics; 2021 May; 37(8):1045-1051. PubMed ID: 33136153
[TBL] [Abstract][Full Text] [Related]
16. Cytogenetically balanced translocations are associated with focal copy number alterations.
Watson SK; deLeeuw RJ; Horsman DE; Squire JA; Lam WL
Hum Genet; 2007 Feb; 120(6):795-805. PubMed ID: 17051368
[TBL] [Abstract][Full Text] [Related]
17. HiCARN: resolution enhancement of Hi-C data using cascading residual networks.
Hicks P; Oluwadare O
Bioinformatics; 2022 Apr; 38(9):2414-2421. PubMed ID: 35274679
[TBL] [Abstract][Full Text] [Related]
18. Boost-HiC: computational enhancement of long-range contacts in chromosomal contact maps.
Carron L; Morlot JB; Matthys V; Lesne A; Mozziconacci J
Bioinformatics; 2019 Aug; 35(16):2724-2729. PubMed ID: 30615061
[TBL] [Abstract][Full Text] [Related]
19. Extending partial haplotypes to full genome haplotypes using chromosome conformation capture data.
Ben-Elazar S; Chor B; Yakhini Z
Bioinformatics; 2016 Sep; 32(17):i559-i566. PubMed ID: 27587675
[TBL] [Abstract][Full Text] [Related]
20. A pipeline for complete characterization of complex germline rearrangements from long DNA reads.
Mitsuhashi S; Ohori S; Katoh K; Frith MC; Matsumoto N
Genome Med; 2020 Jul; 12(1):67. PubMed ID: 32731881
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]