These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

136 related articles for article (PubMed ID: 29055314)

  • 1. Predicting reaction coordinates in energy landscapes with diffusion anisotropy.
    Tiwary P; Berne BJ
    J Chem Phys; 2017 Oct; 147(15):152701. PubMed ID: 29055314
    [TBL] [Abstract][Full Text] [Related]  

  • 2. How wet should be the reaction coordinate for ligand unbinding?
    Tiwary P; Berne BJ
    J Chem Phys; 2016 Aug; 145(5):054113. PubMed ID: 27497545
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Multi-dimensional spectral gap optimization of order parameters (SGOOP) through conditional probability factorization.
    Smith Z; Pramanik D; Tsai ST; Tiwary P
    J Chem Phys; 2018 Dec; 149(23):234105. PubMed ID: 30579304
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Toward Automated Sampling of Polymorph Nucleation and Free Energies with the SGOOP and Metadynamics.
    Zou Z; Tsai ST; Tiwary P
    J Phys Chem B; 2021 Dec; 125(47):13049-13056. PubMed ID: 34788047
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SGOOP-d: Estimating Kinetic Distances and Reaction Coordinate Dimensionality for Rare Event Systems from Biased/Unbiased Simulations.
    Tsai ST; Smith Z; Tiwary P
    J Chem Theory Comput; 2021 Nov; 17(11):6757-6765. PubMed ID: 34662516
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reaction coordinates and rate constants for liquid droplet nucleation: Quantifying the interplay between driving force and memory.
    Tsai ST; Smith Z; Tiwary P
    J Chem Phys; 2019 Oct; 151(15):154106. PubMed ID: 31640371
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Kramers turnover: From energy diffusion to spatial diffusion using metadynamics.
    Tiwary P; Berne BJ
    J Chem Phys; 2016 Apr; 144(13):134103. PubMed ID: 27059558
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Spectral gap optimization of order parameters for sampling complex molecular systems.
    Tiwary P; Berne BJ
    Proc Natl Acad Sci U S A; 2016 Mar; 113(11):2839-44. PubMed ID: 26929365
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Quantum mechanical calculations of charge effects on gating the KcsA channel.
    Kariev AM; Znamenskiy VS; Green ME
    Biochim Biophys Acta; 2007 May; 1768(5):1218-29. PubMed ID: 17336921
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Reaction coordinates, one-dimensional Smoluchowski equations, and a test for dynamical self-consistency.
    Peters B; Bolhuis PG; Mullen RG; Shea JE
    J Chem Phys; 2013 Feb; 138(5):054106. PubMed ID: 23406097
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Variable-free exploration of stochastic models: a gene regulatory network example.
    Erban R; Frewen TA; Wang X; Elston TC; Coifman R; Nadler B; Kevrekidis IG
    J Chem Phys; 2007 Apr; 126(15):155103. PubMed ID: 17461667
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Stretching of single poly-ubiquitin molecules revisited: dynamic disorder in the non-exponential unfolding kinetics.
    Zheng Y; Bian Y; Zhao N; Hou Z
    J Chem Phys; 2014 Mar; 140(12):125102. PubMed ID: 24697481
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Semiclassical calculation of nonadiabatic thermal rate constants: application to condensed phase reactions.
    Zhao Y; Li X; Zheng Z; Liang W
    J Chem Phys; 2006 Mar; 124(11):114508. PubMed ID: 16555902
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Diffusion of molecules on biological membranes of nonplanar form. II. Diffusion anisotropy.
    Aizenbud BM; Gershon ND
    Biophys J; 1985 Oct; 48(4):543-6. PubMed ID: 4052567
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Extending the fluctuation theorem to describe reaction coordinates.
    Paramore S; Ayton GS; Voth GA
    J Chem Phys; 2007 Feb; 126(5):051102. PubMed ID: 17302463
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Spatial dynamics of a vegetation model with uptake-diffusion feedback in an arid environment.
    Sun GQ; Hou LF; Li L; Jin Z; Wang H
    J Math Biol; 2022 Oct; 85(5):50. PubMed ID: 36227425
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Space-time thermodynamics and subsystem observables in a kinetically constrained model of glassy materials.
    Jack RL; Garrahan JP; Chandler D
    J Chem Phys; 2006 Nov; 125(18):184509. PubMed ID: 17115767
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assessment of Scavenger Receptor Cysteine-Rich Domain Binding to Bacteria.
    Telfer JC; Hsu H; Tyner MD; Le Page L
    Methods Mol Biol; 2022; 2421():141-150. PubMed ID: 34870817
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Liquid-solid coexistence via the metadynamics approach.
    Prestipino S; Giaquinta PV
    J Chem Phys; 2008 Mar; 128(11):114707. PubMed ID: 18361601
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Kinetic theory of dark solitons with tunable friction.
    Hurst HM; Efimkin DK; Spielman IB; Galitski V
    Phys Rev A (Coll Park); 2017 May; 95(5):. PubMed ID: 29744482
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.