584 related articles for article (PubMed ID: 29069293)
21. LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.
Warren RL; Yang C; Vandervalk BP; Behsaz B; Lagman A; Jones SJ; Birol I
Gigascience; 2015; 4():35. PubMed ID: 26244089
[TBL] [Abstract][Full Text] [Related]
22. ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs.
Coombe L; Nikolić V; Chu J; Birol I; Warren RL
Bioinformatics; 2020 Jun; 36(12):3885-3887. PubMed ID: 32311025
[TBL] [Abstract][Full Text] [Related]
23. Compression of genomic sequencing reads via hash-based reordering: algorithm and analysis.
Chandak S; Tatwawadi K; Weissman T
Bioinformatics; 2018 Feb; 34(4):558-567. PubMed ID: 29444237
[TBL] [Abstract][Full Text] [Related]
24. LRCstats, a tool for evaluating long reads correction methods.
La S; Haghshenas E; Chauve C
Bioinformatics; 2017 Nov; 33(22):3652-3654. PubMed ID: 29036421
[TBL] [Abstract][Full Text] [Related]
25. Sealer: a scalable gap-closing application for finishing draft genomes.
Paulino D; Warren RL; Vandervalk BP; Raymond A; Jackman SD; Birol I
BMC Bioinformatics; 2015 Jul; 16(1):230. PubMed ID: 26209068
[TBL] [Abstract][Full Text] [Related]
26. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
[TBL] [Abstract][Full Text] [Related]
27. Discovery and genotyping of novel sequence insertions in many sequenced individuals.
Kavak P; Lin YY; Numanagic I; Asghari H; Güngör T; Alkan C; Hach F
Bioinformatics; 2017 Jul; 33(14):i161-i169. PubMed ID: 28881988
[TBL] [Abstract][Full Text] [Related]
28. HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly.
Huang S; Kang M; Xu A
Bioinformatics; 2017 Aug; 33(16):2577-2579. PubMed ID: 28407147
[TBL] [Abstract][Full Text] [Related]
29. ReMILO: reference assisted misassembly detection algorithm using short and long reads.
Bao E; Song C; Lan L
Bioinformatics; 2018 Jan; 34(1):24-32. PubMed ID: 28961789
[TBL] [Abstract][Full Text] [Related]
30. MTG-Link: leveraging barcode information from linked-reads to assemble specific loci.
Guichard A; Legeai F; Tagu D; Lemaitre C
BMC Bioinformatics; 2023 Jul; 24(1):284. PubMed ID: 37452278
[TBL] [Abstract][Full Text] [Related]
31. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
Wilton R; Li X; Feinberg AP; Szalay AS
Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
[TBL] [Abstract][Full Text] [Related]
32. Kollector: transcript-informed, targeted de novo assembly of gene loci.
Kucuk E; Chu J; Vandervalk BP; Hammond SA; Warren RL; Birol I
Bioinformatics; 2017 Jun; 33(12):1782-1788. PubMed ID: 28186221
[TBL] [Abstract][Full Text] [Related]
33. GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
Gritsenko AA; Nijkamp JF; Reinders MJ; de Ridder D
Bioinformatics; 2012 Jun; 28(11):1429-37. PubMed ID: 22492642
[TBL] [Abstract][Full Text] [Related]
34. MsPAC: a tool for haplotype-phased structural variant detection.
Rodriguez OL; Ritz A; Sharp AJ; Bashir A
Bioinformatics; 2020 Feb; 36(3):922-924. PubMed ID: 31397844
[TBL] [Abstract][Full Text] [Related]
35. QuorUM: An Error Corrector for Illumina Reads.
Marçais G; Yorke JA; Zimin A
PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
[TBL] [Abstract][Full Text] [Related]
36. NextPolish: a fast and efficient genome polishing tool for long-read assembly.
Hu J; Fan J; Sun Z; Liu S
Bioinformatics; 2020 Apr; 36(7):2253-2255. PubMed ID: 31778144
[TBL] [Abstract][Full Text] [Related]
37. GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads.
Dishuck PC; Rozanski AN; Logsdon GA; Porubsky D; Eichler EE
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36321867
[TBL] [Abstract][Full Text] [Related]
38. Long Range Sequencing and Validation of Insect Genome Assemblies.
Saha S
Methods Mol Biol; 2019; 1858():33-44. PubMed ID: 30414109
[TBL] [Abstract][Full Text] [Related]
39. yacrd and fpa: upstream tools for long-read genome assembly.
Marijon P; Chikhi R; Varré JS
Bioinformatics; 2020 Jun; 36(12):3894-3896. PubMed ID: 32315402
[TBL] [Abstract][Full Text] [Related]
40. BFC: correcting Illumina sequencing errors.
Li H
Bioinformatics; 2015 Sep; 31(17):2885-7. PubMed ID: 25953801
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
