343 related articles for article (PubMed ID: 29069312)
1. PESTO: Parameter EStimation TOolbox.
Stapor P; Weindl D; Ballnus B; Hug S; Loos C; Fiedler A; Krause S; Hroß S; Fröhlich F; Hasenauer J
Bioinformatics; 2018 Feb; 34(4):705-707. PubMed ID: 29069312
[TBL] [Abstract][Full Text] [Related]
2. GenSSI 2.0: multi-experiment structural identifiability analysis of SBML models.
Ligon TS; Fröhlich F; Chis OT; Banga JR; Balsa-Canto E; Hasenauer J
Bioinformatics; 2018 Apr; 34(8):1421-1423. PubMed ID: 29206901
[TBL] [Abstract][Full Text] [Related]
3. Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis.
Stapor P; Fröhlich F; Hasenauer J
Bioinformatics; 2018 Jul; 34(13):i151-i159. PubMed ID: 29949990
[TBL] [Abstract][Full Text] [Related]
4. Parameter estimation for dynamical systems with discrete events and logical operations.
Fröhlich F; Theis FJ; Rädler JO; Hasenauer J
Bioinformatics; 2017 Apr; 33(7):1049-1056. PubMed ID: 28040696
[TBL] [Abstract][Full Text] [Related]
5. Hierarchical optimization for the efficient parametrization of ODE models.
Loos C; Krause S; Hasenauer J
Bioinformatics; 2018 Dec; 34(24):4266-4273. PubMed ID: 30010716
[TBL] [Abstract][Full Text] [Related]
6. pyPESTO: a modular and scalable tool for parameter estimation for dynamic models.
Schälte Y; Fröhlich F; Jost PJ; Vanhoefer J; Pathirana D; Stapor P; Lakrisenko P; Wang D; Raimúndez E; Merkt S; Schmiester L; Städter P; Grein S; Dudkin E; Doresic D; Weindl D; Hasenauer J
Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37995297
[TBL] [Abstract][Full Text] [Related]
7. An easy and efficient approach for testing identifiability.
Kreutz C
Bioinformatics; 2018 Jun; 34(11):1913-1921. PubMed ID: 29365095
[TBL] [Abstract][Full Text] [Related]
8. A scalable moment-closure approximation for large-scale biochemical reaction networks.
Kazeroonian A; Theis FJ; Hasenauer J
Bioinformatics; 2017 Jul; 33(14):i293-i300. PubMed ID: 28881983
[TBL] [Abstract][Full Text] [Related]
9. STRIKE-GOLDD 4.0: user-friendly, efficient analysis of structural identifiability and observability.
Díaz-Seoane S; Rey Barreiro X; Villaverde AF
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36398887
[TBL] [Abstract][Full Text] [Related]
10. A Cytoscape app for motif enumeration with ISMAGS.
Van Parys T; Melckenbeeck I; Houbraken M; Audenaert P; Colle D; Pickavet M; Demeester P; Van de Peer Y
Bioinformatics; 2017 Feb; 33(3):461-463. PubMed ID: 28158465
[TBL] [Abstract][Full Text] [Related]
11. FALCON: a toolbox for the fast contextualization of logical networks.
De Landtsheer S; Trairatphisan P; Lucarelli P; Sauter T
Bioinformatics; 2017 Nov; 33(21):3431-3436. PubMed ID: 28673016
[TBL] [Abstract][Full Text] [Related]
12. AMICI: high-performance sensitivity analysis for large ordinary differential equation models.
Fröhlich F; Weindl D; Schälte Y; Pathirana D; Paszkowski Ł; Lines GT; Stapor P; Hasenauer J
Bioinformatics; 2021 Oct; 37(20):3676-3677. PubMed ID: 33821950
[TBL] [Abstract][Full Text] [Related]
13. PDEparams: parameter fitting toolbox for partial differential equations in python.
Parra-Rojas C; Hernandez-Vargas EA
Bioinformatics; 2020 Apr; 36(8):2618-2619. PubMed ID: 31851311
[TBL] [Abstract][Full Text] [Related]
14. TADOSS: computational estimation of tandem domain swap stability.
Lafita A; Tian P; Best RB; Bateman A
Bioinformatics; 2019 Jul; 35(14):2507-2508. PubMed ID: 30500878
[TBL] [Abstract][Full Text] [Related]
15. Goldilocks: a tool for identifying genomic regions that are 'just right'.
Nicholls SM; Clare A; Randall JC
Bioinformatics; 2016 Jul; 32(13):2047-9. PubMed ID: 27153673
[TBL] [Abstract][Full Text] [Related]
16. PyDREAM: high-dimensional parameter inference for biological models in python.
Shockley EM; Vrugt JA; Lopez CF
Bioinformatics; 2018 Feb; 34(4):695-697. PubMed ID: 29028896
[TBL] [Abstract][Full Text] [Related]
17. MOCCASIN: converting MATLAB ODE models to SBML.
Gómez HF; Hucka M; Keating SM; Nudelman G; Iber D; Sealfon SC
Bioinformatics; 2016 Jun; 32(12):1905-6. PubMed ID: 26861819
[TBL] [Abstract][Full Text] [Related]
18. AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms.
Hosny A; Vera-Licona P; Laubenbacher R; Favre T
Bioinformatics; 2016 Aug; 32(15):2396-8. PubMed ID: 27153722
[TBL] [Abstract][Full Text] [Related]
19. Efficient gradient-based parameter estimation for dynamic models using qualitative data.
Schmiester L; Weindl D; Hasenauer J
Bioinformatics; 2021 Dec; 37(23):4493-4500. PubMed ID: 34260697
[TBL] [Abstract][Full Text] [Related]
20. RaaMLab: A MATLAB toolbox that generates amino acid groups and reduced amino acid modes.
Xi B; Tao J; Liu X; Xu X; He P; Dai Q
Biosystems; 2019 Jun; 180():38-45. PubMed ID: 30904554
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]