225 related articles for article (PubMed ID: 29070028)
1. riboviz: analysis and visualization of ribosome profiling datasets.
Carja O; Xing T; Wallace EWJ; Plotkin JB; Shah P
BMC Bioinformatics; 2017 Oct; 18(1):461. PubMed ID: 29070028
[TBL] [Abstract][Full Text] [Related]
2. riboviz 2: a flexible and robust ribosome profiling data analysis and visualization workflow.
Cope AL; Anderson F; Favate J; Jackson M; Mok A; Kurowska A; Liu J; MacKenzie E; Shivakumar V; Tilton P; Winterbourne SM; Xue S; Kavoussanakis K; Lareau LF; Shah P; Wallace EWJ
Bioinformatics; 2022 Apr; 38(8):2358-2360. PubMed ID: 35157051
[TBL] [Abstract][Full Text] [Related]
3. Exploring Ribosome-Positioning on Translating Transcripts with Ribosome Profiling.
Cope AL; Vellappan S; Favate JS; Skalenko KS; Yadavalli SS; Shah P
Methods Mol Biol; 2022; 2404():83-110. PubMed ID: 34694605
[TBL] [Abstract][Full Text] [Related]
4. RIVET: comprehensive graphic user interface for analysis and exploration of genome-wide translatomics data.
Ernlund AW; Schneider RJ; Ruggles KV
BMC Genomics; 2018 Nov; 19(1):809. PubMed ID: 30409155
[TBL] [Abstract][Full Text] [Related]
5. Computational resources for ribosome profiling: from database to Web server and software.
Wang H; Wang Y; Xie Z
Brief Bioinform; 2019 Jan; 20(1):144-155. PubMed ID: 28968766
[TBL] [Abstract][Full Text] [Related]
6. Using the sORFs.Org Database.
Olexiouk V; Menschaert G
Curr Protoc Bioinformatics; 2019 Mar; 65(1):e68. PubMed ID: 30485709
[TBL] [Abstract][Full Text] [Related]
7. HRPDviewer: human ribosome profiling data viewer.
Wu WS; Jiang YX; Chang JW; Chu YH; Chiu YH; Tsao YH; Nordling TEM; Tseng YY; Tseng JT
Database (Oxford); 2018 Jan; 2018():. PubMed ID: 30010738
[TBL] [Abstract][Full Text] [Related]
8. XPRESSyourself: Enhancing, standardizing, and automating ribosome profiling computational analyses yields improved insight into data.
Berg JA; Belyeu JR; Morgan JT; Ouyang Y; Bott AJ; Quinlan AR; Gertz J; Rutter J
PLoS Comput Biol; 2020 Jan; 16(1):e1007625. PubMed ID: 32004313
[TBL] [Abstract][Full Text] [Related]
9. Shoelaces: an interactive tool for ribosome profiling processing and visualization.
Birkeland Å; ChyŻyńska K; Valen E
BMC Genomics; 2018 Jul; 19(1):543. PubMed ID: 30021517
[TBL] [Abstract][Full Text] [Related]
10. mQC: A post-mapping data exploration tool for ribosome profiling.
Verbruggen S; Menschaert G
Comput Methods Programs Biomed; 2019 Nov; 181():104806. PubMed ID: 30401579
[TBL] [Abstract][Full Text] [Related]
11. RiboA: a web application to identify ribosome A-site locations in ribosome profiling data.
Shao D; Ahmed N; Soni N; O'Brien EP
BMC Bioinformatics; 2021 Mar; 22(1):156. PubMed ID: 33765913
[TBL] [Abstract][Full Text] [Related]
12. STAR: an integrated solution to management and visualization of sequencing data.
Wang T; Liu J; Shen L; Tonti-Filippini J; Zhu Y; Jia H; Lister R; Whitaker JW; Ecker JR; Millar AH; Ren B; Wang W
Bioinformatics; 2013 Dec; 29(24):3204-10. PubMed ID: 24078702
[TBL] [Abstract][Full Text] [Related]
13. GWIPS-viz: development of a ribo-seq genome browser.
Michel AM; Fox G; M Kiran A; De Bo C; O'Connor PB; Heaphy SM; Mullan JP; Donohue CA; Higgins DG; Baranov PV
Nucleic Acids Res; 2014 Jan; 42(Database issue):D859-64. PubMed ID: 24185699
[TBL] [Abstract][Full Text] [Related]
14. TranslatomeDB: a comprehensive database and cloud-based analysis platform for translatome sequencing data.
Liu W; Xiang L; Zheng T; Jin J; Zhang G
Nucleic Acids Res; 2018 Jan; 46(D1):D206-D212. PubMed ID: 29106630
[TBL] [Abstract][Full Text] [Related]
15. Using the Ribodeblur pipeline to recover A-sites from yeast ribosome profiling data.
Wang H; Kingsford C; McManus CJ
Methods; 2018 Mar; 137():67-70. PubMed ID: 29330118
[TBL] [Abstract][Full Text] [Related]
16. RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data.
Michel AM; Mullan JP; Velayudhan V; O'Connor PB; Donohue CA; Baranov PV
RNA Biol; 2016; 13(3):316-9. PubMed ID: 26821742
[TBL] [Abstract][Full Text] [Related]
17. An interactive web application for the dissemination of human systems immunology data.
Speake C; Presnell S; Domico K; Zeitner B; Bjork A; Anderson D; Mason MJ; Whalen E; Vargas O; Popov D; Rinchai D; Jourde-Chiche N; Chiche L; Quinn C; Chaussabel D
J Transl Med; 2015 Jun; 13():196. PubMed ID: 26088622
[TBL] [Abstract][Full Text] [Related]
18. The GWIPS-viz Browser.
Kiniry SJ; Michel AM; Baranov PV
Curr Protoc Bioinformatics; 2018 Jun; 62(1):e50. PubMed ID: 29927076
[TBL] [Abstract][Full Text] [Related]
19. riboWaltz: Optimization of ribosome P-site positioning in ribosome profiling data.
Lauria F; Tebaldi T; Bernabò P; Groen EJN; Gillingwater TH; Viero G
PLoS Comput Biol; 2018 Aug; 14(8):e1006169. PubMed ID: 30102689
[TBL] [Abstract][Full Text] [Related]
20. Exploring Ribosome Positioning on Translating Transcripts with Ribosome Profiling.
Spealman P; Wang H; May G; Kingsford C; McManus CJ
Methods Mol Biol; 2016; 1358():71-97. PubMed ID: 26463378
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]