These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
420 related articles for article (PubMed ID: 29072142)
1. MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs. Li D; Huang Y; Leung CM; Luo R; Ting HF; Lam TW BMC Bioinformatics; 2017 Oct; 18(Suppl 12):408. PubMed ID: 29072142 [TBL] [Abstract][Full Text] [Related]
2. Xander: employing a novel method for efficient gene-targeted metagenomic assembly. Wang Q; Fish JA; Gilman M; Sun Y; Brown CT; Tiedje JM; Cole JR Microbiome; 2015; 3():32. PubMed ID: 26246894 [TBL] [Abstract][Full Text] [Related]
3. MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices. Li D; Luo R; Liu CM; Leung CM; Ting HF; Sadakane K; Yamashita H; Lam TW Methods; 2016 Jun; 102():3-11. PubMed ID: 27012178 [TBL] [Abstract][Full Text] [Related]
4. Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes. Guo J; Quensen JF; Sun Y; Wang Q; Brown CT; Cole JR; Tiedje JM Front Genet; 2019; 10():957. PubMed ID: 31749830 [TBL] [Abstract][Full Text] [Related]
5. Evaluation of short read metagenomic assembly. Charuvaka A; Rangwala H BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S8. PubMed ID: 21989307 [TBL] [Abstract][Full Text] [Related]
6. Inference of viral quasispecies with a paired de Bruijn graph. Freire B; Ladra S; Paramá JR; Salmela L Bioinformatics; 2021 May; 37(4):473-481. PubMed ID: 32926162 [TBL] [Abstract][Full Text] [Related]
7. Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs. Kundeti VK; Rajasekaran S; Dinh H; Vaughn M; Thapar V BMC Bioinformatics; 2010 Nov; 11():560. PubMed ID: 21078174 [TBL] [Abstract][Full Text] [Related]
9. A space and time-efficient index for the compacted colored de Bruijn graph. Almodaresi F; Sarkar H; Srivastava A; Patro R Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982 [TBL] [Abstract][Full Text] [Related]
10. GraphBin: refined binning of metagenomic contigs using assembly graphs. Mallawaarachchi V; Wickramarachchi A; Lin Y Bioinformatics; 2020 Jun; 36(11):3307-3313. PubMed ID: 32167528 [TBL] [Abstract][Full Text] [Related]
11. HyDA-Vista: towards optimal guided selection of k-mer size for sequence assembly. Shariat B; Movahedi NS; Chitsaz H; Boucher C BMC Genomics; 2014; 15 Suppl 10(Suppl 10):S9. PubMed ID: 25558875 [TBL] [Abstract][Full Text] [Related]
12. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Li D; Liu CM; Luo R; Sadakane K; Lam TW Bioinformatics; 2015 May; 31(10):1674-6. PubMed ID: 25609793 [TBL] [Abstract][Full Text] [Related]
13. A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data. Zhang Y; Sun Y; Cole JR PLoS Comput Biol; 2014 Aug; 10(8):e1003737. PubMed ID: 25122209 [TBL] [Abstract][Full Text] [Related]
14. Building large updatable colored de Bruijn graphs via merging. Muggli MD; Alipanahi B; Boucher C Bioinformatics; 2019 Jul; 35(14):i51-i60. PubMed ID: 31510647 [TBL] [Abstract][Full Text] [Related]
15. Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics. Wu YW; Rho M; Doak TG; Ye Y Bioinformatics; 2012 Sep; 28(18):i363-i369. PubMed ID: 22962453 [TBL] [Abstract][Full Text] [Related]
16. Scalable Genome Assembly through Parallel de Bruijn Graph Construction for Multiple k-mers. Mahadik K; Wright C; Kulkarni M; Bagchi S; Chaterji S Sci Rep; 2019 Oct; 9(1):14882. PubMed ID: 31619717 [TBL] [Abstract][Full Text] [Related]
17. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Peng Y; Leung HC; Yiu SM; Chin FY Bioinformatics; 2012 Jun; 28(11):1420-8. PubMed ID: 22495754 [TBL] [Abstract][Full Text] [Related]
18. deBGR: an efficient and near-exact representation of the weighted de Bruijn graph. Pandey P; Bender MA; Johnson R; Patro R Bioinformatics; 2017 Jul; 33(14):i133-i141. PubMed ID: 28881995 [TBL] [Abstract][Full Text] [Related]
19. Integrating long-range connectivity information into de Bruijn graphs. Turner I; Garimella KV; Iqbal Z; McVean G Bioinformatics; 2018 Aug; 34(15):2556-2565. PubMed ID: 29554215 [TBL] [Abstract][Full Text] [Related]
20. Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut. Vázquez-Castellanos JF; García-López R; Pérez-Brocal V; Pignatelli M; Moya A BMC Genomics; 2014 Jan; 15():37. PubMed ID: 24438450 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]