517 related articles for article (PubMed ID: 29077859)
1. panX: pan-genome analysis and exploration.
Ding W; Baumdicker F; Neher RA
Nucleic Acids Res; 2018 Jan; 46(1):e5. PubMed ID: 29077859
[TBL] [Abstract][Full Text] [Related]
2. ITEP: an integrated toolkit for exploration of microbial pan-genomes.
Benedict MN; Henriksen JR; Metcalf WW; Whitaker RJ; Price ND
BMC Genomics; 2014 Jan; 15():8. PubMed ID: 24387194
[TBL] [Abstract][Full Text] [Related]
3. Pan-Tetris: an interactive visualisation for Pan-genomes.
Hennig A; Bernhardt J; Nieselt K
BMC Bioinformatics; 2015; 16 Suppl 11(Suppl 11):S3. PubMed ID: 26328606
[TBL] [Abstract][Full Text] [Related]
4. Robust identification of orthologues and paralogues for microbial pan-genomics using GET_HOMOLOGUES: a case study of pIncA/C plasmids.
Vinuesa P; Contreras-Moreira B
Methods Mol Biol; 2015; 1231():203-32. PubMed ID: 25343868
[TBL] [Abstract][Full Text] [Related]
5. Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer.
Bromberg R; Grishin NV; Otwinowski Z
PLoS Comput Biol; 2016 Jun; 12(6):e1004985. PubMed ID: 27336403
[TBL] [Abstract][Full Text] [Related]
6. MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks.
Peng Y; Tang S; Wang D; Zhong H; Jia H; Cai X; Zhang Z; Xiao M; Yang H; Wang J; Kristiansen K; Xu X; Li J
Gigascience; 2018 Nov; 7(11):. PubMed ID: 30277499
[TBL] [Abstract][Full Text] [Related]
7. Testing the infinitely many genes model for the evolution of the bacterial core genome and pangenome.
Collins RE; Higgs PG
Mol Biol Evol; 2012 Nov; 29(11):3413-25. PubMed ID: 22752048
[TBL] [Abstract][Full Text] [Related]
8. Reconstructing the Ancestral Relationships Between Bacterial Pathogen Genomes.
Collins C; Didelot X
Methods Mol Biol; 2017; 1535():109-137. PubMed ID: 27914076
[TBL] [Abstract][Full Text] [Related]
9. micropan: an R-package for microbial pan-genomics.
Snipen L; Liland KH
BMC Bioinformatics; 2015 Mar; 16():79. PubMed ID: 25888166
[TBL] [Abstract][Full Text] [Related]
10. bcgTree: automatized phylogenetic tree building from bacterial core genomes.
Ankenbrand MJ; Keller A
Genome; 2016 Oct; 59(10):783-791. PubMed ID: 27603265
[TBL] [Abstract][Full Text] [Related]
11. Comparative genomic analysis reveals the evolution and environmental adaptation strategies of vibrios.
Lin H; Yu M; Wang X; Zhang XH
BMC Genomics; 2018 Feb; 19(1):135. PubMed ID: 29433445
[TBL] [Abstract][Full Text] [Related]
12. Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
Kordi M; Bansal MS
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1077-1090. PubMed ID: 28622673
[TBL] [Abstract][Full Text] [Related]
13. Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation.
Inglin RC; Meile L; Stevens MJA
BMC Genomics; 2018 Apr; 19(1):284. PubMed ID: 29690879
[TBL] [Abstract][Full Text] [Related]
14. Accurate reconstruction of bacterial pan- and core genomes with PEPPAN.
Zhou Z; Charlesworth J; Achtman M
Genome Res; 2020 Nov; 30(11):1667-1679. PubMed ID: 33055096
[TBL] [Abstract][Full Text] [Related]
15. Comparative Genomics for Prokaryotes.
Setubal JC; Almeida NF; Wattam AR
Methods Mol Biol; 2018; 1704():55-78. PubMed ID: 29277863
[TBL] [Abstract][Full Text] [Related]
16. PANINI: Pangenome Neighbour Identification for Bacterial Populations.
Abudahab K; Prada JM; Yang Z; Bentley SD; Croucher NJ; Corander J; Aanensen DM
Microb Genom; 2019 Apr; 5(4):. PubMed ID: 30465642
[TBL] [Abstract][Full Text] [Related]
17. AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods.
Wei X; Tan H; Lobb B; Zhen W; Wu Z; Parks DH; Neufeld JD; Moreno-Hagelsieb G; Doxey AC
Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38747283
[TBL] [Abstract][Full Text] [Related]
18. A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies.
Thakur S; Guttman DS
BMC Bioinformatics; 2016 Jun; 17(1):260. PubMed ID: 27363390
[TBL] [Abstract][Full Text] [Related]
19. Pan-Genome Storage and Analysis Techniques.
Zekic T; Holley G; Stoye J
Methods Mol Biol; 2018; 1704():29-53. PubMed ID: 29277862
[TBL] [Abstract][Full Text] [Related]
20. PGAP-X: extension on pan-genome analysis pipeline.
Zhao Y; Sun C; Zhao D; Zhang Y; You Y; Jia X; Yang J; Wang L; Wang J; Fu H; Kang Y; Chen F; Yu J; Wu J; Xiao J
BMC Genomics; 2018 Jan; 19(Suppl 1):36. PubMed ID: 29363431
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
