These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

530 related articles for article (PubMed ID: 29077859)

  • 21. PGAP-X: extension on pan-genome analysis pipeline.
    Zhao Y; Sun C; Zhao D; Zhang Y; You Y; Jia X; Yang J; Wang L; Wang J; Fu H; Kang Y; Chen F; Yu J; Wu J; Xiao J
    BMC Genomics; 2018 Jan; 19(Suppl 1):36. PubMed ID: 29363431
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Challenges in gene-oriented approaches for pangenome content discovery.
    Bonnici V; Maresi E; Giugno R
    Brief Bioinform; 2021 May; 22(3):. PubMed ID: 32893299
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Robust classifying of prokaryotic genomes.
    Korenblat K; Volkovich Z; Bolshoy A
    Comput Biol Chem; 2012 Oct; 40():20-9. PubMed ID: 22940609
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Pan-Genome Analyses of
    Wang M; Zhu H; Kong Z; Li T; Ma L; Liu D; Shen Q
    Int J Mol Sci; 2020 May; 21(9):. PubMed ID: 32403359
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Phenetic Comparison of Prokaryotic Genomes Using k-mers.
    Déraspe M; Raymond F; Boisvert S; Culley A; Roy PH; Laviolette F; Corbeil J
    Mol Biol Evol; 2017 Oct; 34(10):2716-2729. PubMed ID: 28957508
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Anchor-based whole genome phylogeny (ABWGP): a tool for inferring evolutionary relationship among closely related microorganisms [corrected].
    Vishnoi A; Roy R; Prasad HK; Bhattacharya A
    PLoS One; 2010 Nov; 5(11):e14159. PubMed ID: 21152403
    [TBL] [Abstract][Full Text] [Related]  

  • 27. BMX: a tool for computing bacterial phyletic composition from orthologous maps.
    Kulohoma BW
    BMC Res Notes; 2015 Feb; 8():51. PubMed ID: 25756192
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Pan-PCR, a computational method for designing bacterium-typing assays based on whole-genome sequence data.
    Yang JY; Brooks S; Meyer JA; Blakesley RR; Zelazny AM; Segre JA; Snitkin ES
    J Clin Microbiol; 2013 Mar; 51(3):752-8. PubMed ID: 23254127
    [TBL] [Abstract][Full Text] [Related]  

  • 29. GRAST: a new way of genome reduction analysis using comparative genomics.
    Toft C; Fares MA
    Bioinformatics; 2006 Jul; 22(13):1551-61. PubMed ID: 16601001
    [TBL] [Abstract][Full Text] [Related]  

  • 30. UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction.
    Na SI; Kim YO; Yoon SH; Ha SM; Baek I; Chun J
    J Microbiol; 2018 Apr; 56(4):280-285. PubMed ID: 29492869
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Inferring Horizontal Gene Transfer with DarkHorse, Phylomizer, and ETE Toolkits.
    Delaye L; Vargas C; Latorre A; Moya A
    Methods Mol Biol; 2020; 2075():355-369. PubMed ID: 31584175
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Optimizing the Parametrization of Homologue Classification in the Pan-Genome Computation for a Bacterial Species: Case Study Streptococcus pyogenes.
    Tantoso E; Eisenhaber B; Eisenhaber F
    Methods Mol Biol; 2022; 2449():299-324. PubMed ID: 35507269
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications.
    Siegel N; Hoegg S; Salzburger W; Braasch I; Meyer A
    BMC Genomics; 2007 Sep; 8():312. PubMed ID: 17822543
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Different evolutionary trends form the twilight zone of the bacterial pan-genome.
    Horesh G; Taylor-Brown A; McGimpsey S; Lassalle F; Corander J; Heinz E; Thomson NR
    Microb Genom; 2021 Sep; 7(9):. PubMed ID: 34559043
    [TBL] [Abstract][Full Text] [Related]  

  • 35. xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria.
    Bush EC; Clark AE; DeRanek CA; Eng A; Forman J; Heath K; Lee AB; Stoebel DM; Wang Z; Wilber M; Wu H
    BMC Bioinformatics; 2018 Feb; 19(1):32. PubMed ID: 29402213
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes.
    Kaas RS; Friis C; Ussery DW; Aarestrup FM
    BMC Genomics; 2012 Oct; 13():577. PubMed ID: 23114024
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Computational workflow for analysis of gain and loss of genes in distantly related genomes.
    Ptitsyn A; Moroz LL
    BMC Bioinformatics; 2012; 13 Suppl 15(Suppl 15):S5. PubMed ID: 23046496
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Finding approximate gene clusters with Gecko 3.
    Winter S; Jahn K; Wehner S; Kuchenbecker L; Marz M; Stoye J; Böcker S
    Nucleic Acids Res; 2016 Nov; 44(20):9600-9610. PubMed ID: 27679480
    [TBL] [Abstract][Full Text] [Related]  

  • 39. The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise.
    Dutilh BE; Huynen MA; Bruno WJ; Snel B
    J Mol Evol; 2004 May; 58(5):527-39. PubMed ID: 15170256
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A Guide to Phylogenomic Inference.
    Patané JSL; Martins J; Setubal JC
    Methods Mol Biol; 2024; 2802():267-345. PubMed ID: 38819564
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 27.