These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

530 related articles for article (PubMed ID: 29077859)

  • 41. The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.
    Treangen TJ; Ondov BD; Koren S; Phillippy AM
    Genome Biol; 2014; 15(11):524. PubMed ID: 25410596
    [TBL] [Abstract][Full Text] [Related]  

  • 42. SyntTax: a web server linking synteny to prokaryotic taxonomy.
    Oberto J
    BMC Bioinformatics; 2013 Jan; 14():4. PubMed ID: 23323735
    [TBL] [Abstract][Full Text] [Related]  

  • 43. A brief review of software tools for pangenomics.
    Xiao J; Zhang Z; Wu J; Yu J
    Genomics Proteomics Bioinformatics; 2015 Feb; 13(1):73-6. PubMed ID: 25721608
    [TBL] [Abstract][Full Text] [Related]  

  • 44. PanCoreGen - Profiling, detecting, annotating protein-coding genes in microbial genomes.
    Paul S; Bhardwaj A; Bag SK; Sokurenko EV; Chattopadhyay S
    Genomics; 2015 Dec; 106(6):367-72. PubMed ID: 26456591
    [TBL] [Abstract][Full Text] [Related]  

  • 45. PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes.
    Clarke TH; Brinkac LM; Inman JM; Sutton G; Fouts DE
    BMC Bioinformatics; 2018 Jun; 19(1):246. PubMed ID: 29945570
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study.
    Podar M; Eads JR; Richardson TH
    BMC Evol Biol; 2005 Aug; 5():42. PubMed ID: 16083508
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Hierarchical sets: analyzing pangenome structure through scalable set visualizations.
    Pedersen TL
    Bioinformatics; 2017 Jun; 33(11):1604-1612. PubMed ID: 28130242
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.
    Wu M; Scott AJ
    Bioinformatics; 2012 Apr; 28(7):1033-4. PubMed ID: 22332237
    [TBL] [Abstract][Full Text] [Related]  

  • 49. SYN-View: A Phylogeny-Based Synteny Exploration Tool for the Identification of Gene Clusters Linked to Antibiotic Resistance.
    Stahlecker J; Mingyar E; Ziemert N; Mungan MD
    Molecules; 2020 Dec; 26(1):. PubMed ID: 33396183
    [TBL] [Abstract][Full Text] [Related]  

  • 50. ezTree: an automated pipeline for identifying phylogenetic marker genes and inferring evolutionary relationships among uncultivated prokaryotic draft genomes.
    Wu YW
    BMC Genomics; 2018 Jan; 19(Suppl 1):921. PubMed ID: 29363425
    [TBL] [Abstract][Full Text] [Related]  

  • 51. PanGP: a tool for quickly analyzing bacterial pan-genome profile.
    Zhao Y; Jia X; Yang J; Ling Y; Zhang Z; Yu J; Wu J; Xiao J
    Bioinformatics; 2014 May; 30(9):1297-9. PubMed ID: 24420766
    [TBL] [Abstract][Full Text] [Related]  

  • 52. PentaPlot: a software tool for the illustration of genome mosaicism.
    Hamel L; Zhaxybayeva O; Gogarten JP
    BMC Bioinformatics; 2005 Jun; 6():139. PubMed ID: 15938752
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Bacterial molecular phylogeny using supertree approach.
    Daubin V; Gouy M; Perrière G
    Genome Inform; 2001; 12():155-64. PubMed ID: 11791234
    [TBL] [Abstract][Full Text] [Related]  

  • 54. IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes.
    Hadjithomas M; Chen IA; Chu K; Huang J; Ratner A; Palaniappan K; Andersen E; Markowitz V; Kyrpides NC; Ivanova NN
    Nucleic Acids Res; 2017 Jan; 45(D1):D560-D565. PubMed ID: 27903896
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Everything at once: comparative analysis of the genomes of bacterial pathogens.
    Laing CR; Zhang Y; Thomas JE; Gannon VP
    Vet Microbiol; 2011 Nov; 153(1-2):13-26. PubMed ID: 21764529
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks.
    Bertelli C; Gray KL; Woods N; Lim AC; Tilley KE; Winsor GL; Hoad GR; Roudgar A; Spencer A; Peltier J; Warren D; Raphenya AR; McArthur AG; Brinkman FSL
    Microb Genom; 2022 May; 8(5):. PubMed ID: 35584003
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Pan-genomic analysis provides insights into the genomic variation and evolution of Salmonella Paratyphi A.
    Liang W; Zhao Y; Chen C; Cui X; Yu J; Xiao J; Kan B
    PLoS One; 2012; 7(9):e45346. PubMed ID: 23028950
    [TBL] [Abstract][Full Text] [Related]  

  • 58. PanWeb: A web interface for pan-genomic analysis.
    Pantoja Y; Pinheiro K; Veras A; Araújo F; Lopes de Sousa A; Guimarães LC; Silva A; Ramos RTJ
    PLoS One; 2017; 12(5):e0178154. PubMed ID: 28542514
    [TBL] [Abstract][Full Text] [Related]  

  • 59. On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation.
    Kundu S; Bansal MS
    BMC Bioinformatics; 2018 Aug; 19(Suppl 9):290. PubMed ID: 30367593
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Aquerium: A web application for comparative exploration of domain-based protein occurrences on the taxonomically clustered genome tree.
    Adebali O; Zhulin IB
    Proteins; 2017 Jan; 85(1):72-77. PubMed ID: 27802571
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 27.