461 related articles for article (PubMed ID: 29082551)
21. Ab initio protein structure prediction using chunk-TASSER.
Zhou H; Skolnick J
Biophys J; 2007 Sep; 93(5):1510-8. PubMed ID: 17496016
[TBL] [Abstract][Full Text] [Related]
22. Analysis of deep learning methods for blind protein contact prediction in CASP12.
Wang S; Sun S; Xu J
Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):67-77. PubMed ID: 28845538
[TBL] [Abstract][Full Text] [Related]
23. Analysis of TASSER-based CASP7 protein structure prediction results.
Zhou H; Pandit SB; Lee SY; Borreguero J; Chen H; Wroblewska L; Skolnick J
Proteins; 2007; 69 Suppl 8():90-7. PubMed ID: 17705276
[TBL] [Abstract][Full Text] [Related]
24. CONFOLD: Residue-residue contact-guided ab initio protein folding.
Adhikari B; Bhattacharya D; Cao R; Cheng J
Proteins; 2015 Aug; 83(8):1436-49. PubMed ID: 25974172
[TBL] [Abstract][Full Text] [Related]
25. Ab initio modeling of small proteins by iterative TASSER simulations.
Wu S; Skolnick J; Zhang Y
BMC Biol; 2007 May; 5():17. PubMed ID: 17488521
[TBL] [Abstract][Full Text] [Related]
26. Protein structure prediction using Rosetta in CASP12.
Ovchinnikov S; Park H; Kim DE; DiMaio F; Baker D
Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):113-121. PubMed ID: 28940798
[TBL] [Abstract][Full Text] [Related]
27. Integrating deep learning, threading alignments, and a multi-MSA strategy for high-quality protein monomer and complex structure prediction in CASP15.
Zheng W; Wuyun Q; Freddolino PL; Zhang Y
Proteins; 2023 Dec; 91(12):1684-1703. PubMed ID: 37650367
[TBL] [Abstract][Full Text] [Related]
28. Template-based protein structure modeling using TASSER(VMT.).
Zhou H; Skolnick J
Proteins; 2012 Feb; 80(2):352-61. PubMed ID: 22105797
[TBL] [Abstract][Full Text] [Related]
29. Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
Zheng W; Wuyun Q; Li Y; Mortuza SM; Zhang C; Pearce R; Ruan J; Zhang Y
PLoS Comput Biol; 2019 Oct; 15(10):e1007411. PubMed ID: 31622328
[TBL] [Abstract][Full Text] [Related]
30. Assessment of the model refinement category in CASP12.
Hovan L; Oleinikovas V; Yalinca H; Kryshtafovych A; Saladino G; Gervasio FL
Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):152-167. PubMed ID: 29071750
[TBL] [Abstract][Full Text] [Related]
31. Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins.
Roche R; Bhattacharya S; Bhattacharya D
PLoS Comput Biol; 2021 Feb; 17(2):e1008753. PubMed ID: 33621244
[TBL] [Abstract][Full Text] [Related]
32. I-TASSER: fully automated protein structure prediction in CASP8.
Zhang Y
Proteins; 2009; 77 Suppl 9(Suppl 9):100-13. PubMed ID: 19768687
[TBL] [Abstract][Full Text] [Related]
33. Protein inter-residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14.
Li Y; Zhang C; Zheng W; Zhou X; Bell EW; Yu DJ; Zhang Y
Proteins; 2021 Dec; 89(12):1911-1921. PubMed ID: 34382712
[TBL] [Abstract][Full Text] [Related]
34. CONFOLD2: improved contact-driven ab initio protein structure modeling.
Adhikari B; Cheng J
BMC Bioinformatics; 2018 Jan; 19(1):22. PubMed ID: 29370750
[TBL] [Abstract][Full Text] [Related]
35. Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.
Walsh I; Baù D; Martin AJ; Mooney C; Vullo A; Pollastri G
BMC Struct Biol; 2009 Jan; 9():5. PubMed ID: 19183478
[TBL] [Abstract][Full Text] [Related]
36. Improved protein contact predictions with the MetaPSICOV2 server in CASP12.
Buchan DWA; Jones DT
Proteins; 2018 Mar; 86 Suppl 1(Suppl Suppl 1):78-83. PubMed ID: 28901583
[TBL] [Abstract][Full Text] [Related]
37. Evaluation of free modeling targets in CASP11 and ROLL.
Kinch LN; Li W; Monastyrskyy B; Kryshtafovych A; Grishin NV
Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):51-66. PubMed ID: 26677002
[TBL] [Abstract][Full Text] [Related]
38. Estimation of model accuracy in CASP13.
Cheng J; Choe MH; Elofsson A; Han KS; Hou J; Maghrabi AHA; McGuffin LJ; Menéndez-Hurtado D; Olechnovič K; Schwede T; Studer G; Uziela K; Venclovas Č; Wallner B
Proteins; 2019 Dec; 87(12):1361-1377. PubMed ID: 31265154
[TBL] [Abstract][Full Text] [Related]
39. Accurate template-based modeling in CASP12 using the IntFOLD4-TS, ModFOLD6, and ReFOLD methods.
McGuffin LJ; Shuid AN; Kempster R; Maghrabi AHA; Nealon JO; Salehe BR; Atkins JD; Roche DB
Proteins; 2018 Mar; 86 Suppl 1():335-344. PubMed ID: 28748648
[TBL] [Abstract][Full Text] [Related]
40. Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field.
Xu D; Zhang Y
Proteins; 2012 Jul; 80(7):1715-35. PubMed ID: 22411565
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
