These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

309 related articles for article (PubMed ID: 29084957)

  • 1. Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates.
    Frøslev TG; Kjøller R; Bruun HH; Ejrnæs R; Brunbjerg AK; Pietroni C; Hansen AJ
    Nat Commun; 2017 Oct; 8(1):1188. PubMed ID: 29084957
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding.
    Brandt MI; Trouche B; Quintric L; Günther B; Wincker P; Poulain J; Arnaud-Haond S
    Mol Ecol Resour; 2021 Aug; 21(6):1904-1921. PubMed ID: 33835712
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Metabarcoding of freshwater invertebrates to detect the effects of a pesticide spill.
    Andújar C; Arribas P; Gray C; Bruce C; Woodward G; Yu DW; Vogler AP
    Mol Ecol; 2018 Jan; 27(1):146-166. PubMed ID: 29113023
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers.
    Fahner NA; Shokralla S; Baird DJ; Hajibabaei M
    PLoS One; 2016; 11(6):e0157505. PubMed ID: 27310720
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale.
    Krehenwinkel H; Pomerantz A; Henderson JB; Kennedy SR; Lim JY; Swamy V; Shoobridge JD; Graham N; Patel NH; Gillespie RG; Prost S
    Gigascience; 2019 May; 8(5):. PubMed ID: 30824940
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Automated DNA-based plant identification for large-scale biodiversity assessment.
    Papadopoulou A; Chesters D; Coronado I; De la Cadena G; Cardoso A; Reyes JC; Maes JM; Rueda RM; Gómez-Zurita J
    Mol Ecol Resour; 2015 Jan; 15(1):136-52. PubMed ID: 24666885
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Bioinformatic challenges for DNA metabarcoding of plants and animals.
    Coissac E; Riaz T; Puillandre N
    Mol Ecol; 2012 Apr; 21(8):1834-47. PubMed ID: 22486822
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Utilizing ITS1 and ITS2 to study environmental fungal diversity using pyrosequencing.
    Monard C; Gantner S; Stenlid J
    FEMS Microbiol Ecol; 2013 Apr; 84(1):165-75. PubMed ID: 23176677
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass--Sequence Relationships with an Innovative Metabarcoding Protocol.
    Elbrecht V; Leese F
    PLoS One; 2015; 10(7):e0130324. PubMed ID: 26154168
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comparing diversity levels in environmental samples: DNA sequence capture and metabarcoding approaches using 18S and COI genes.
    Giebner H; Langen K; Bourlat SJ; Kukowka S; Mayer C; Astrin JJ; Misof B; Fonseca VG
    Mol Ecol Resour; 2020 Sep; 20(5):1333-1345. PubMed ID: 32462738
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DNA Sequencing Technologies and DNA Barcoding.
    David A; Deepa Arul Priya J; Gautam A
    Methods Mol Biol; 2024; 2744():139-154. PubMed ID: 38683316
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A CRISPR-based strategy for targeted sequencing in biodiversity science.
    Littleford-Colquhoun B; Kartzinel TR
    Mol Ecol Resour; 2024 Apr; 24(3):e13920. PubMed ID: 38153158
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing.
    Taylor DL; Walters WA; Lennon NJ; Bochicchio J; Krohn A; Caporaso JG; Pennanen T
    Appl Environ Microbiol; 2016 Dec; 82(24):7217-7226. PubMed ID: 27736792
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Biodiversity assessments in the 21st century: the potential of insect traps to complement environmental samples for estimating eukaryotic and prokaryotic diversity using high-throughput DNA metabarcoding
    Ritter CD; Häggqvist S; Karlsson D; Sääksjärvi IE; Muasya AM; Nilsson RH; Antonelli A
    Genome; 2019 Mar; 62(3):147-159. PubMed ID: 30673361
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data.
    Dufresne Y; Lejzerowicz F; Perret-Gentil LA; Pawlowski J; Cordier T
    BMC Bioinformatics; 2019 Feb; 20(1):88. PubMed ID: 30782112
    [TBL] [Abstract][Full Text] [Related]  

  • 16. New universal ITS2 primers for high-resolution herbivory analyses using DNA metabarcoding in both tropical and temperate zones.
    Moorhouse-Gann RJ; Dunn JC; de Vere N; Goder M; Cole N; Hipperson H; Symondson WOC
    Sci Rep; 2018 Jun; 8(1):8542. PubMed ID: 29867115
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Long-read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity.
    Jamy M; Foster R; Barbera P; Czech L; Kozlov A; Stamatakis A; Bending G; Hilton S; Bass D; Burki F
    Mol Ecol Resour; 2020 Mar; 20(2):429-443. PubMed ID: 31705734
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Plant-derived environmental DNA complements diversity estimates from traditional arthropod monitoring methods but outperforms them detecting plant-arthropod interactions.
    Weber S; Stothut M; Mahla L; Kripp A; Hirschler L; Lenz N; Junker A; Künzel S; Krehenwinkel H
    Mol Ecol Resour; 2024 Feb; 24(2):e13900. PubMed ID: 38010630
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Impact of mitotype diversity on metabarcoding biodiversity estimations in Insecta and Arachnida using different sample preparation strategies.
    Li TC; Miao YH; Wang T; Zu GH; Huang DW; Xiao JH
    Mol Ecol Resour; 2022 Nov; 22(8):2967-2980. PubMed ID: 35757869
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding.
    Banchi E; Ametrano CG; Greco S; Stanković D; Muggia L; Pallavicini A
    Database (Oxford); 2020 Jan; 2020():. PubMed ID: 32016319
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.