89 related articles for article (PubMed ID: 29088314)
1. An exact test for comparing a fixed quantitative property between gene sets.
Parks MM
Bioinformatics; 2018 Mar; 34(6):971-977. PubMed ID: 29088314
[TBL] [Abstract][Full Text] [Related]
2. Exact p-values for pairwise comparison of Friedman rank sums, with application to comparing classifiers.
Eisinga R; Heskes T; Pelzer B; Te Grotenhuis M
BMC Bioinformatics; 2017 Jan; 18(1):68. PubMed ID: 28122501
[TBL] [Abstract][Full Text] [Related]
3. Parallelized calculation of permutation tests.
Ekvall M; Höhle M; Käll L
Bioinformatics; 2021 Apr; 36(22-23):5392-5397. PubMed ID: 33289531
[TBL] [Abstract][Full Text] [Related]
4. SimSeq: a nonparametric approach to simulation of RNA-sequence datasets.
Benidt S; Nettleton D
Bioinformatics; 2015 Jul; 31(13):2131-40. PubMed ID: 25725090
[TBL] [Abstract][Full Text] [Related]
5. Differential regulation enrichment analysis via the integration of transcriptional regulatory network and gene expression data.
Ma S; Jiang T; Jiang R
Bioinformatics; 2015 Feb; 31(4):563-71. PubMed ID: 25322838
[TBL] [Abstract][Full Text] [Related]
6. ExactFDR: exact computation of false discovery rate estimate in case-control association studies.
Wojcik J; Forner K
Bioinformatics; 2008 Oct; 24(20):2407-8. PubMed ID: 18662924
[TBL] [Abstract][Full Text] [Related]
7. DBGSA: a novel method of distance-based gene set analysis.
Li J; Wang L; Xu L; Zhang R; Huang M; Wang K; Xu J; Lv H; Shang Z; Zhang M; Jiang Y; Guo M; Li X
J Hum Genet; 2012 Oct; 57(10):642-53. PubMed ID: 22786580
[TBL] [Abstract][Full Text] [Related]
8. Gene set analysis: limitations in popular existing methods and proposed improvements.
Mishra P; Törönen P; Leino Y; Holm L
Bioinformatics; 2014 Oct; 30(19):2747-56. PubMed ID: 24903419
[TBL] [Abstract][Full Text] [Related]
9. A novel bi-level meta-analysis approach: applied to biological pathway analysis.
Nguyen T; Tagett R; Donato M; Mitrea C; Draghici S
Bioinformatics; 2016 Feb; 32(3):409-16. PubMed ID: 26471455
[TBL] [Abstract][Full Text] [Related]
10. Moment based gene set tests.
Larson JL; Owen AB
BMC Bioinformatics; 2015 Apr; 16():132. PubMed ID: 25928861
[TBL] [Abstract][Full Text] [Related]
11. RANKS: a flexible tool for node label ranking and classification in biological networks.
Valentini G; Armano G; Frasca M; Lin J; Mesiti M; Re M
Bioinformatics; 2016 Sep; 32(18):2872-4. PubMed ID: 27256314
[TBL] [Abstract][Full Text] [Related]
12. LEAP: constructing gene co-expression networks for single-cell RNA-sequencing data using pseudotime ordering.
Specht AT; Li J
Bioinformatics; 2017 Mar; 33(5):764-766. PubMed ID: 27993778
[TBL] [Abstract][Full Text] [Related]
13. QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data.
Zhang Y; Xie J; Yang J; Fennell A; Zhang C; Ma Q
Bioinformatics; 2017 Feb; 33(3):450-452. PubMed ID: 28172469
[TBL] [Abstract][Full Text] [Related]
14. Squeakr: an exact and approximate k-mer counting system.
Pandey P; Bender MA; Johnson R; Patro R; Berger B
Bioinformatics; 2018 Feb; 34(4):568-575. PubMed ID: 29444235
[TBL] [Abstract][Full Text] [Related]
15. Fewer permutations, more accurate P-values.
Knijnenburg TA; Wessels LF; Reinders MJ; Shmulevich I
Bioinformatics; 2009 Jun; 25(12):i161-8. PubMed ID: 19477983
[TBL] [Abstract][Full Text] [Related]
16. FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis.
Zhang Y; Topham DJ; Thakar J; Qiu X
Bioinformatics; 2017 Jul; 33(13):1944-1952. PubMed ID: 28334094
[TBL] [Abstract][Full Text] [Related]
17. Meta-analytic framework for liquid association.
Wang L; Liu S; Ding Y; Yuan SS; Ho YY; Tseng GC
Bioinformatics; 2017 Jul; 33(14):2140-2147. PubMed ID: 28334340
[TBL] [Abstract][Full Text] [Related]
18. Predicting tumor purity from methylation microarray data.
Zhang N; Wu HJ; Zhang W; Wang J; Wu H; Zheng X
Bioinformatics; 2015 Nov; 31(21):3401-5. PubMed ID: 26112293
[TBL] [Abstract][Full Text] [Related]
19. cit: hypothesis testing software for mediation analysis in genomic applications.
Millstein J; Chen GK; Breton CV
Bioinformatics; 2016 Aug; 32(15):2364-5. PubMed ID: 27153715
[TBL] [Abstract][Full Text] [Related]
20. missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.
Phipson B; Maksimovic J; Oshlack A
Bioinformatics; 2016 Jan; 32(2):286-8. PubMed ID: 26424855
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]