These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

161 related articles for article (PubMed ID: 29092009)

  • 1. Machine learning annotation of human branchpoints.
    Signal B; Gloss BS; Dinger ME; Mercer TR
    Bioinformatics; 2018 Mar; 34(6):920-927. PubMed ID: 29092009
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A sequence-based, deep learning model accurately predicts RNA splicing branchpoints.
    Paggi JM; Bejerano G
    RNA; 2018 Dec; 24(12):1647-1658. PubMed ID: 30224349
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Predicting human splicing branchpoints by combining sequence-derived features and multi-label learning methods.
    Zhang W; Zhu X; Fu Y; Tsuji J; Weng Z
    BMC Bioinformatics; 2017 Dec; 18(Suppl 13):464. PubMed ID: 29219070
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genome-wide discovery of human splicing branchpoints.
    Mercer TR; Clark MB; Andersen SB; Brunck ME; Haerty W; Crawford J; Taft RJ; Nielsen LK; Dinger ME; Mattick JS
    Genome Res; 2015 Feb; 25(2):290-303. PubMed ID: 25561518
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Most human introns are recognized via multiple and tissue-specific branchpoints.
    Pineda JMB; Bradley RK
    Genes Dev; 2018 Apr; 32(7-8):577-591. PubMed ID: 29666160
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ANAQUIN: a software toolkit for the analysis of spike-in controls for next generation sequencing.
    Wong T; Deveson IW; Hardwick SA; Mercer TR
    Bioinformatics; 2017 Jun; 33(11):1723-1724. PubMed ID: 28130232
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The splicing effect of variants at branchpoint elements in cancer genes.
    Canson DM; Dumenil T; Parsons MT; O'Mara TA; Davidson AL; Okano S; Signal B; Mercer TR; Glubb DM; Spurdle AB
    Genet Med; 2022 Feb; 24(2):398-409. PubMed ID: 34906448
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Identification of functional single nucleotide polymorphisms in the branchpoint site.
    Chiang HL; Wu JY; Chen YT
    Hum Genomics; 2017 Nov; 11(1):27. PubMed ID: 29121990
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SNiPA: an interactive, genetic variant-centered annotation browser.
    Arnold M; Raffler J; Pfeufer A; Suhre K; Kastenmüller G
    Bioinformatics; 2015 Apr; 31(8):1334-6. PubMed ID: 25431330
    [TBL] [Abstract][Full Text] [Related]  

  • 10. regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests.
    Gel B; Díez-Villanueva A; Serra E; Buschbeck M; Peinado MA; Malinverni R
    Bioinformatics; 2016 Jan; 32(2):289-91. PubMed ID: 26424858
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genomation: a toolkit to summarize, annotate and visualize genomic intervals.
    Akalin A; Franke V; Vlahoviček K; Mason CE; Schübeler D
    Bioinformatics; 2015 Apr; 31(7):1127-9. PubMed ID: 25417204
    [TBL] [Abstract][Full Text] [Related]  

  • 12. diffloop: a computational framework for identifying and analyzing differential DNA loops from sequencing data.
    Lareau CA; Aryee MJ
    Bioinformatics; 2018 Feb; 34(4):672-674. PubMed ID: 29028898
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Orchid: a novel management, annotation and machine learning framework for analyzing cancer mutations.
    Cario CL; Witte JS
    Bioinformatics; 2018 Mar; 34(6):936-942. PubMed ID: 29106441
    [TBL] [Abstract][Full Text] [Related]  

  • 14. R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454 Sequencing data.
    Klein HU; Bartenhagen C; Kohlmann A; Grossmann V; Ruckert C; Haferlach T; Dugas M
    Bioinformatics; 2011 Apr; 27(8):1162-3. PubMed ID: 21349869
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Jannovar: a java library for exome annotation.
    Jäger M; Wang K; Bauer S; Smedley D; Krawitz P; Robinson PN
    Hum Mutat; 2014 May; 35(5):548-55. PubMed ID: 24677618
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction.
    Frankish A; Uszczynska B; Ritchie GR; Gonzalez JM; Pervouchine D; Petryszak R; Mudge JM; Fonseca N; Brazma A; Guigo R; Harrow J
    BMC Genomics; 2015; 16 Suppl 8(Suppl 8):S2. PubMed ID: 26110515
    [TBL] [Abstract][Full Text] [Related]  

  • 17. annotatr: genomic regions in context.
    Cavalcante RG; Sartor MA
    Bioinformatics; 2017 Aug; 33(15):2381-2383. PubMed ID: 28369316
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genome-wide detection of human variants that disrupt intronic branchpoints.
    Zhang P; Philippot Q; Ren W; Lei WT; Li J; Stenson PD; Palacín PS; Colobran R; Boisson B; Zhang SY; Puel A; Pan-Hammarström Q; Zhang Q; Cooper DN; Abel L; Casanova JL
    Proc Natl Acad Sci U S A; 2022 Nov; 119(44):e2211194119. PubMed ID: 36306325
    [TBL] [Abstract][Full Text] [Related]  

  • 19. VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.
    Obenchain V; Lawrence M; Carey V; Gogarten S; Shannon P; Morgan M
    Bioinformatics; 2014 Jul; 30(14):2076-8. PubMed ID: 24681907
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Functional annotation of genomic variants in studies of late-onset Alzheimer's disease.
    Butkiewicz M; Blue EE; Leung YY; Jian X; Marcora E; Renton AE; Kuzma A; Wang LS; Koboldt DC; Haines JL; Bush WS
    Bioinformatics; 2018 Aug; 34(16):2724-2731. PubMed ID: 29590295
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.