BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

229 related articles for article (PubMed ID: 29095974)

  • 1. BEAM web server: a tool for structural RNA motif discovery.
    Pietrosanto M; Adinolfi M; Casula R; Ausiello G; Ferrè F; Helmer-Citterich M
    Bioinformatics; 2018 Mar; 34(6):1058-1060. PubMed ID: 29095974
    [TBL] [Abstract][Full Text] [Related]  

  • 2. BRIO: a web server for RNA sequence and structure motif scan.
    Guarracino A; Pepe G; Ballesio F; Adinolfi M; Pietrosanto M; Sangiovanni E; Vitale I; Ausiello G; Helmer-Citterich M
    Nucleic Acids Res; 2021 Jul; 49(W1):W67-W71. PubMed ID: 34038531
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Web-Beagle: a web server for the alignment of RNA secondary structures.
    Mattei E; Pietrosanto M; Ferrè F; Helmer-Citterich M
    Nucleic Acids Res; 2015 Jul; 43(W1):W493-7. PubMed ID: 25977293
    [TBL] [Abstract][Full Text] [Related]  

  • 4. CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking.
    Hua L; Song Y; Kim N; Laing C; Wang JT; Schlick T
    PLoS One; 2016; 11(1):e0147097. PubMed ID: 26789998
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data.
    Yao J; Reinharz V; Major F; Waldispühl J
    Nucleic Acids Res; 2017 Jul; 45(W1):W440-W444. PubMed ID: 28525607
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
    Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
    BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequences.
    Luehr S; Hartmann H; Söding J
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W104-9. PubMed ID: 22693218
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Rtools: a web server for various secondary structural analyses on single RNA sequences.
    Hamada M; Ono Y; Kiryu H; Sato K; Kato Y; Fukunaga T; Mori R; Asai K
    Nucleic Acids Res; 2016 Jul; 44(W1):W302-7. PubMed ID: 27131356
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Riboswitch finder--a tool for identification of riboswitch RNAs.
    Bengert P; Dandekar T
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W154-9. PubMed ID: 15215370
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A novel method for the identification of conserved structural patterns in RNA: From small scale to high-throughput applications.
    Pietrosanto M; Mattei E; Helmer-Citterich M; Ferrè F
    Nucleic Acids Res; 2016 Oct; 44(18):8600-8609. PubMed ID: 27580722
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MotifNet: a web-server for network motif analysis.
    Smoly IY; Lerman E; Ziv-Ukelson M; Yeger-Lotem E
    Bioinformatics; 2017 Jun; 33(12):1907-1909. PubMed ID: 28165111
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps.
    Drory Retwitzer M; Polishchuk M; Churkin E; Kifer I; Yakhini Z; Barash D
    Nucleic Acids Res; 2015 Jul; 43(W1):W507-12. PubMed ID: 25940619
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Vfold-Pipeline: a web server for RNA 3D structure prediction from sequences.
    Li J; Zhang S; Zhang D; Chen SJ
    Bioinformatics; 2022 Aug; 38(16):4042-4043. PubMed ID: 35758624
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The new protein topology graph library web server.
    Schäfer T; Scheck A; Bruneß D; May P; Koch I
    Bioinformatics; 2016 Feb; 32(3):474-6. PubMed ID: 26446136
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ModeRNA server: an online tool for modeling RNA 3D structures.
    Rother M; Milanowska K; Puton T; Jeleniewicz J; Rother K; Bujnicki JM
    Bioinformatics; 2011 Sep; 27(17):2441-2. PubMed ID: 21727140
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins.
    Kazan H; Morris Q
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W180-6. PubMed ID: 23754853
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CircularLogo: A lightweight web application to visualize intra-motif dependencies.
    Ye Z; Ma T; Kalmbach MT; Dasari S; Kocher JA; Wang L
    BMC Bioinformatics; 2017 May; 18(1):269. PubMed ID: 28532394
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MultiSETTER: web server for multiple RNA structure comparison.
    Čech P; Hoksza D; Svozil D
    BMC Bioinformatics; 2015 Aug; 16():253. PubMed ID: 26264783
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences.
    Scaria V; Hariharan M; Arora A; Maiti S
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W683-5. PubMed ID: 16845097
    [TBL] [Abstract][Full Text] [Related]  

  • 20. TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets.
    Dang LT; Tondl M; Chiu MHH; Revote J; Paten B; Tano V; Tokolyi A; Besse F; Quaife-Ryan G; Cumming H; Drvodelic MJ; Eichenlaub MP; Hallab JC; Stolper JS; Rossello FJ; Bogoyevitch MA; Jans DA; Nim HT; Porrello ER; Hudson JE; Ramialison M
    BMC Genomics; 2018 Apr; 19(1):238. PubMed ID: 29621972
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.