206 related articles for article (PubMed ID: 29101847)
1. Inter-residue, inter-protein and inter-family coevolution: bridging the scales.
Szurmant H; Weigt M
Curr Opin Struct Biol; 2018 Jun; 50():26-32. PubMed ID: 29101847
[TBL] [Abstract][Full Text] [Related]
2. Origins of coevolution between residues distant in protein 3D structures.
Anishchenko I; Ovchinnikov S; Kamisetty H; Baker D
Proc Natl Acad Sci U S A; 2017 Aug; 114(34):9122-9127. PubMed ID: 28784799
[TBL] [Abstract][Full Text] [Related]
3. Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era.
Kamisetty H; Ovchinnikov S; Baker D
Proc Natl Acad Sci U S A; 2013 Sep; 110(39):15674-9. PubMed ID: 24009338
[TBL] [Abstract][Full Text] [Related]
4. Protein-protein interactions leave evolutionary footprints: High molecular coevolution at the core of interfaces.
Teppa E; Zea DJ; Marino-Buslje C
Protein Sci; 2017 Dec; 26(12):2438-2444. PubMed ID: 28980349
[TBL] [Abstract][Full Text] [Related]
5. Sequence coevolution between RNA and protein characterized by mutual information between residue triplets.
Brandman R; Brandman Y; Pande VS
PLoS One; 2012; 7(1):e30022. PubMed ID: 22279560
[TBL] [Abstract][Full Text] [Related]
6. Oligomerisation status and evolutionary conservation of interfaces of protein structural domain superfamilies.
Sukhwal A; Sowdhamini R
Mol Biosyst; 2013 Jul; 9(7):1652-61. PubMed ID: 23532342
[TBL] [Abstract][Full Text] [Related]
7. Evolutionarily conserved pathways of energetic connectivity in protein families.
Lockless SW; Ranganathan R
Science; 1999 Oct; 286(5438):295-9. PubMed ID: 10514373
[TBL] [Abstract][Full Text] [Related]
8. Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.
Gloor GB; Martin LC; Wahl LM; Dunn SD
Biochemistry; 2005 May; 44(19):7156-65. PubMed ID: 15882054
[TBL] [Abstract][Full Text] [Related]
9. Prediction of amino acid positions specific for functional groups in a protein family based on local sequence similarity.
Karasev DA; Veselovsky AV; Oparina NY; Filimonov DA; Sobolev BN
J Mol Recognit; 2016 Apr; 29(4):159-69. PubMed ID: 26549790
[TBL] [Abstract][Full Text] [Related]
10. Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis.
Gueudré T; Baldassi C; Zamparo M; Weigt M; Pagnani A
Proc Natl Acad Sci U S A; 2016 Oct; 113(43):12186-12191. PubMed ID: 27729520
[TBL] [Abstract][Full Text] [Related]
11. Partner-aware prediction of interacting residues in protein-protein complexes from sequence data.
Ahmad S; Mizuguchi K
PLoS One; 2011; 6(12):e29104. PubMed ID: 22194998
[TBL] [Abstract][Full Text] [Related]
12. Robust signals of coevolution of interacting residues in mammalian proteomes identified by phylogeny-aided structural analysis.
Choi SS; Li W; Lahn BT
Nat Genet; 2005 Dec; 37(12):1367-71. PubMed ID: 16282975
[TBL] [Abstract][Full Text] [Related]
13. The functional importance of co-evolving residues in proteins.
Sandler I; Zigdon N; Levy E; Aharoni A
Cell Mol Life Sci; 2014 Feb; 71(4):673-82. PubMed ID: 23995987
[TBL] [Abstract][Full Text] [Related]
14. Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information.
Wang K; Horst JA; Cheng G; Nickle DC; Samudrala R
PLoS Comput Biol; 2008 Sep; 4(9):e1000181. PubMed ID: 18818722
[TBL] [Abstract][Full Text] [Related]
15. A simple physical model for the prediction and design of protein-DNA interactions.
Havranek JJ; Duarte CM; Baker D
J Mol Biol; 2004 Nov; 344(1):59-70. PubMed ID: 15504402
[TBL] [Abstract][Full Text] [Related]
16. Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design.
Cheng G; Qian B; Samudrala R; Baker D
Nucleic Acids Res; 2005; 33(18):5861-7. PubMed ID: 16224101
[TBL] [Abstract][Full Text] [Related]
17. Protein contacts, inter-residue interactions and side-chain modelling.
Faure G; Bornot A; de Brevern AG
Biochimie; 2008 Apr; 90(4):626-39. PubMed ID: 18086572
[TBL] [Abstract][Full Text] [Related]
18. Bioinformatics identification of coevolving residues.
Dickson RJ; Gloor GB
Methods Mol Biol; 2014; 1123():223-43. PubMed ID: 24510270
[TBL] [Abstract][Full Text] [Related]
19. Estimating residue evolutionary conservation by introducing von Neumann entropy and a novel gap-treating approach.
Zhang SW; Zhang YL; Pan Q; Cheng YM; Chou KC
Amino Acids; 2008 Aug; 35(2):495-501. PubMed ID: 17710364
[TBL] [Abstract][Full Text] [Related]
20. Direct-coupling analysis of residue coevolution captures native contacts across many protein families.
Morcos F; Pagnani A; Lunt B; Bertolino A; Marks DS; Sander C; Zecchina R; Onuchic JN; Hwa T; Weigt M
Proc Natl Acad Sci U S A; 2011 Dec; 108(49):E1293-301. PubMed ID: 22106262
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]