These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

189 related articles for article (PubMed ID: 29103094)

  • 1. Normal mode analysis as a method to derive protein dynamics information from the Protein Data Bank.
    Wako H; Endo S
    Biophys Rev; 2017 Dec; 9(6):877-893. PubMed ID: 29103094
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Normal mode analysis based on an elastic network model for biomolecules in the Protein Data Bank, which uses dihedral angles as independent variables.
    Wako H; Endo S
    Comput Biol Chem; 2013 Jun; 44():22-30. PubMed ID: 23537565
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ProMode: a database of normal mode analyses on protein molecules with a full-atom model.
    Wako H; Kato M; Endo S
    Bioinformatics; 2004 Sep; 20(13):2035-43. PubMed ID: 15059828
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Normal mode analysis calculation for a full-atom model with a smaller number of degrees of freedom for huge protein molecules.
    Endo S; Wako H
    Biophys Physicobiol; 2019; 16():205-212. PubMed ID: 31984173
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Ligand-induced conformational change of a protein reproduced by a linear combination of displacement vectors obtained from normal mode analysis.
    Wako H; Endo S
    Biophys Chem; 2011 Dec; 159(2-3):257-66. PubMed ID: 21807453
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Domain decomposition-based structural condensation of large protein structures for understanding their conformational dynamics.
    Kim JI; Na S; Eom K
    J Comput Chem; 2011 Jan; 32(1):161-9. PubMed ID: 20645300
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Prediction of protein motions from amino acid sequence and its application to protein-protein interaction.
    Hirose S; Yokota K; Kuroda Y; Wako H; Endo S; Kanai S; Noguchi T
    BMC Struct Biol; 2010 Jul; 10():20. PubMed ID: 20626880
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Analysis of conformational motions and related key residue interactions responsible for a specific function of proteins with elastic network model.
    Su JG; Han XM; Zhang X; Hou YX; Zhu JZ; Wu YD
    J Biomol Struct Dyn; 2016; 34(3):560-71. PubMed ID: 25909329
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Local Normal Mode Analysis for Fast Loop Conformational Sampling.
    López-Blanco JR; Dehouck Y; Bastolla U; Chacón P
    J Chem Inf Model; 2022 Sep; 62(18):4561-4568. PubMed ID: 36099639
    [TBL] [Abstract][Full Text] [Related]  

  • 10. iMODS: internal coordinates normal mode analysis server.
    López-Blanco JR; Aliaga JI; Quintana-Ortí ES; Chacón P
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W271-6. PubMed ID: 24771341
    [TBL] [Abstract][Full Text] [Related]  

  • 11. WEBnm@ v2.0: Web server and services for comparing protein flexibility.
    Tiwari SP; Fuglebakk E; Hollup SM; Skjærven L; Cragnolini T; Grindhaug SH; Tekle KM; Reuter N
    BMC Bioinformatics; 2014 Dec; 15(1):427. PubMed ID: 25547242
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Conformational Motions and Functionally Key Residues for Vitamin B12 Transporter BtuCD-BtuF Revealed by Elastic Network Model with a Function-Related Internal Coordinate.
    Su JG; Zhang X; Zhao SX; Li XY; Hou YX; Wu YD; Zhu JZ; An HL
    Int J Mol Sci; 2015 Aug; 16(8):17933-51. PubMed ID: 26247943
    [TBL] [Abstract][Full Text] [Related]  

  • 13. UMass Morph Server: Macromolecular Dynamics Analyses Using Elastic Network Models.
    Jang Y; Kim M
    Conf Proc IEEE Eng Med Biol Soc; 2005; 2005():2599-602. PubMed ID: 17282770
    [TBL] [Abstract][Full Text] [Related]  

  • 14. On the applicability of elastic network normal modes in small-molecule docking.
    Dietzen M; Zotenko E; Hildebrandt A; Lengauer T
    J Chem Inf Model; 2012 Mar; 52(3):844-56. PubMed ID: 22320151
    [TBL] [Abstract][Full Text] [Related]  

  • 15. iMod: multipurpose normal mode analysis in internal coordinates.
    Lopéz-Blanco JR; Garzón JI; Chacón P
    Bioinformatics; 2011 Oct; 27(20):2843-50. PubMed ID: 21873636
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Normal mode analysis of proteins: a comparison of rigid cluster modes with C(alpha) coarse graining.
    Schuyler AD; Chirikjian GS
    J Mol Graph Model; 2004 Jan; 22(3):183-93. PubMed ID: 14629977
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle.
    Tehver R; Chen J; Thirumalai D
    J Mol Biol; 2009 Mar; 387(2):390-406. PubMed ID: 19121324
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Ferreting out correlations from trajectory data.
    Cukier RI
    J Chem Phys; 2011 Dec; 135(22):225103. PubMed ID: 22168728
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A computational investigation of allostery in the catabolite activator protein.
    Li L; Uversky VN; Dunker AK; Meroueh SO
    J Am Chem Soc; 2007 Dec; 129(50):15668-76. PubMed ID: 18041838
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.