BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

389 related articles for article (PubMed ID: 29106417)

  • 1. High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing.
    Lagarde J; Uszczynska-Ratajczak B; Carbonell S; Pérez-Lluch S; Abad A; Davis C; Gingeras TR; Frankish A; Harrow J; Guigo R; Johnson R
    Nat Genet; 2017 Dec; 49(12):1731-1740. PubMed ID: 29106417
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Annotation of Full-Length Long Noncoding RNAs with Capture Long-Read Sequencing (CLS).
    Carbonell Sala S; Uszczyńska-Ratajczak B; Lagarde J; Johnson R; Guigó R
    Methods Mol Biol; 2021; 2254():133-159. PubMed ID: 33326074
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GENCODE: the reference human genome annotation for The ENCODE Project.
    Harrow J; Frankish A; Gonzalez JM; Tapanari E; Diekhans M; Kokocinski F; Aken BL; Barrell D; Zadissa A; Searle S; Barnes I; Bignell A; Boychenko V; Hunt T; Kay M; Mukherjee G; Rajan J; Despacio-Reyes G; Saunders G; Steward C; Harte R; Lin M; Howald C; Tanzer A; Derrien T; Chrast J; Walters N; Balasubramanian S; Pei B; Tress M; Rodriguez JM; Ezkurdia I; van Baren J; Brent M; Haussler D; Kellis M; Valencia A; Reymond A; Gerstein M; Guigó R; Hubbard TJ
    Genome Res; 2012 Sep; 22(9):1760-74. PubMed ID: 22955987
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PacBio single molecule long-read sequencing provides insight into the complexity and diversity of the Pinctada fucata martensii transcriptome.
    Zhang H; Xu H; Liu H; Pan X; Xu M; Zhang G; He M
    BMC Genomics; 2020 Jul; 21(1):481. PubMed ID: 32660426
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GENCODE 2021.
    Frankish A; Diekhans M; Jungreis I; Lagarde J; Loveland JE; Mudge JM; Sisu C; Wright JC; Armstrong J; Barnes I; Berry A; Bignell A; Boix C; Carbonell Sala S; Cunningham F; Di Domenico T; Donaldson S; Fiddes IT; García Girón C; Gonzalez JM; Grego T; Hardy M; Hourlier T; Howe KL; Hunt T; Izuogu OG; Johnson R; Martin FJ; Martínez L; Mohanan S; Muir P; Navarro FCP; Parker A; Pei B; Pozo F; Riera FC; Ruffier M; Schmitt BM; Stapleton E; Suner MM; Sycheva I; Uszczynska-Ratajczak B; Wolf MY; Xu J; Yang YT; Yates A; Zerbino D; Zhang Y; Choudhary JS; Gerstein M; Guigó R; Hubbard TJP; Kellis M; Paten B; Tress ML; Flicek P
    Nucleic Acids Res; 2021 Jan; 49(D1):D916-D923. PubMed ID: 33270111
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome.
    Howald C; Tanzer A; Chrast J; Kokocinski F; Derrien T; Walters N; Gonzalez JM; Frankish A; Aken BL; Hourlier T; Vogel JH; White S; Searle S; Harrow J; Hubbard TJ; Guigó R; Reymond A
    Genome Res; 2012 Sep; 22(9):1698-710. PubMed ID: 22955982
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Bioinformatic Pipelines to Analyze lncRNAs RNAseq Data.
    Agnelli L; Bortoluzzi S; Pruneri G
    Methods Mol Biol; 2021; 2348():55-69. PubMed ID: 34160799
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improved definition of the mouse transcriptome via targeted RNA sequencing.
    Bussotti G; Leonardi T; Clark MB; Mercer TR; Crawford J; Malquori L; Notredame C; Dinger ME; Mattick JS; Enright AJ
    Genome Res; 2016 May; 26(5):705-16. PubMed ID: 27197243
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identifying and functionally characterizing tissue-specific and ubiquitously expressed human lncRNAs.
    Jiang C; Li Y; Zhao Z; Lu J; Chen H; Ding N; Wang G; Xu J; Li X
    Oncotarget; 2016 Feb; 7(6):7120-33. PubMed ID: 26760768
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme.
    Li A; Zhang J; Zhou Z
    BMC Bioinformatics; 2014 Sep; 15(1):311. PubMed ID: 25239089
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Identification and Expression Analysis of Long Intergenic Noncoding RNAs.
    Sun MA; Zhai R; Zhang Q; Wang Y
    Methods Mol Biol; 2018; 1751():139-152. PubMed ID: 29508295
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Methods to Study Long Noncoding RNA Expression and Dynamics in Zebrafish Using RNA Sequencing.
    Mathew S; Sivadas A; Sehgal P; Kaushik K; Vellarikkal SK; Scaria V; Sivasubbu S
    Methods Mol Biol; 2019; 1912():77-110. PubMed ID: 30635891
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
    Derrien T; Johnson R; Bussotti G; Tanzer A; Djebali S; Tilgner H; Guernec G; Martin D; Merkel A; Knowles DG; Lagarde J; Veeravalli L; Ruan X; Ruan Y; Lassmann T; Carninci P; Brown JB; Lipovich L; Gonzalez JM; Thomas M; Davis CA; Shiekhattar R; Gingeras TR; Hubbard TJ; Notredame C; Harrow J; Guigó R
    Genome Res; 2012 Sep; 22(9):1775-89. PubMed ID: 22955988
    [TBL] [Abstract][Full Text] [Related]  

  • 14. FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome.
    Wucher V; Legeai F; Hédan B; Rizk G; Lagoutte L; Leeb T; Jagannathan V; Cadieu E; David A; Lohi H; Cirera S; Fredholm M; Botherel N; Leegwater PAJ; Le Béguec C; Fieten H; Johnson J; Alföldi J; André C; Lindblad-Toh K; Hitte C; Derrien T
    Nucleic Acids Res; 2017 May; 45(8):e57. PubMed ID: 28053114
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq).
    Lagarde J; Uszczynska-Ratajczak B; Santoyo-Lopez J; Gonzalez JM; Tapanari E; Mudge JM; Steward CA; Wilming L; Tanzer A; Howald C; Chrast J; Vela-Boza A; Rueda A; Lopez-Domingo FJ; Dopazo J; Reymond A; Guigó R; Harrow J
    Nat Commun; 2016 Aug; 7():12339. PubMed ID: 27531712
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.
    Gascoigne DK; Cheetham SW; Cattenoz PB; Clark MB; Amaral PP; Taft RJ; Wilhelm D; Dinger ME; Mattick JS
    Bioinformatics; 2012 Dec; 28(23):3042-50. PubMed ID: 23044541
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structural and Functional Annotation of Long Noncoding RNAs.
    Smith MA; Mattick JS
    Methods Mol Biol; 2017; 1526():65-85. PubMed ID: 27896736
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Analysis of Annotated and Unannotated Long Noncoding RNAs from Exosome Subtypes Using Next-Generation RNA Sequencing.
    Suwakulsiri W; Chen M; Greening DW; Xu R; Simpson RJ
    Methods Mol Biol; 2021; 2254():195-218. PubMed ID: 33326077
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study.
    Sun L; Zhang Z; Bailey TL; Perkins AC; Tallack MR; Xu Z; Liu H
    BMC Bioinformatics; 2012 Dec; 13():331. PubMed ID: 23237380
    [TBL] [Abstract][Full Text] [Related]  

  • 20. De novo reconstruction of the Toxoplasma gondii transcriptome improves on the current genome annotation and reveals alternatively spliced transcripts and putative long non-coding RNAs.
    Hassan MA; Melo MB; Haas B; Jensen KD; Saeij JP
    BMC Genomics; 2012 Dec; 13():696. PubMed ID: 23231500
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.