156 related articles for article (PubMed ID: 29112702)
1. CommWalker: correctly evaluating modules in molecular networks in light of annotation bias.
Luecken MD; Page MJT; Crosby AJ; Mason S; Reinert G; Deane CM
Bioinformatics; 2018 Mar; 34(6):994-1000. PubMed ID: 29112702
[TBL] [Abstract][Full Text] [Related]
2. L-GRAAL: Lagrangian graphlet-based network aligner.
Malod-Dognin N; Pržulj N
Bioinformatics; 2015 Jul; 31(13):2182-9. PubMed ID: 25725498
[TBL] [Abstract][Full Text] [Related]
3. LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks.
Hu J; Reinert K
Bioinformatics; 2015 Feb; 31(3):363-72. PubMed ID: 25282642
[TBL] [Abstract][Full Text] [Related]
4. Detecting functional modules in the yeast protein-protein interaction network.
Chen J; Yuan B
Bioinformatics; 2006 Sep; 22(18):2283-90. PubMed ID: 16837529
[TBL] [Abstract][Full Text] [Related]
5. C-DEVA: Detection, evaluation, visualization and annotation of clusters from biological networks.
Li M; Tang Y; Wu X; Wang J; Wu FX; Pan Y
Biosystems; 2016 Dec; 150():78-86. PubMed ID: 27530307
[TBL] [Abstract][Full Text] [Related]
6. RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications.
Alkan F; Erten C
Bioinformatics; 2017 Feb; 33(4):537-544. PubMed ID: 27797764
[TBL] [Abstract][Full Text] [Related]
7. Fuse: multiple network alignment via data fusion.
Gligorijević V; Malod-Dognin N; Pržulj N
Bioinformatics; 2016 Apr; 32(8):1195-203. PubMed ID: 26668003
[TBL] [Abstract][Full Text] [Related]
8. MODifieR: an Ensemble R Package for Inference of Disease Modules from Transcriptomics Networks.
de Weerd HA; Badam TVS; Martínez-Enguita D; Åkesson J; Muthas D; Gustafsson M; Lubovac-Pilav Z
Bioinformatics; 2020 Jun; 36(12):3918-3919. PubMed ID: 32271876
[TBL] [Abstract][Full Text] [Related]
9. A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks.
Wang J; Li M; Chen J; Pan Y
IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(3):607-20. PubMed ID: 20733244
[TBL] [Abstract][Full Text] [Related]
10. The relative vertex clustering value--a new criterion for the fast discovery of functional modules in protein interaction networks.
Ibrahim ZM; Ngom A
BMC Bioinformatics; 2015; 16 Suppl 4(Suppl 4):S3. PubMed ID: 25734691
[TBL] [Abstract][Full Text] [Related]
11. Detection of functional modules from protein interaction networks with an enhanced random walk based algorithm.
Cai B; Wang H; Zheng H; Wang H
Int J Comput Biol Drug Des; 2011; 4(3):290-306. PubMed ID: 21778561
[TBL] [Abstract][Full Text] [Related]
12. Efficient searching and annotation of metabolic networks using chemical similarity.
Pertusi DA; Stine AE; Broadbelt LJ; Tyo KE
Bioinformatics; 2015 Apr; 31(7):1016-24. PubMed ID: 25417203
[TBL] [Abstract][Full Text] [Related]
13. Detecting Functional Modules Based on a Multiple-Grain Model in Large-Scale Protein-Protein Interaction Networks.
Ji J; Lv J; Yang C; Zhang A
IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(4):610-22. PubMed ID: 26394434
[TBL] [Abstract][Full Text] [Related]
14. A nonparametric significance test for sampled networks.
Elliott A; Leicht E; Whitmore A; Reinert G; Reed-Tsochas F
Bioinformatics; 2018 Jan; 34(1):64-71. PubMed ID: 29036452
[TBL] [Abstract][Full Text] [Related]
15. TCRBuilder: multi-state T-cell receptor structure prediction.
Wong WK; Marks C; Leem J; Lewis AP; Shi J; Deane CM
Bioinformatics; 2020 Jun; 36(11):3580-3581. PubMed ID: 32181809
[TBL] [Abstract][Full Text] [Related]
16. Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.
Del Mondo G; Eveillard D; Rusu I
Bioinformatics; 2009 Apr; 25(7):926-32. PubMed ID: 19223451
[TBL] [Abstract][Full Text] [Related]
17. Sphinx: merging knowledge-based and ab initio approaches to improve protein loop prediction.
Marks C; Nowak J; Klostermann S; Georges G; Dunbar J; Shi J; Kelm S; Deane CM
Bioinformatics; 2017 May; 33(9):1346-1353. PubMed ID: 28453681
[TBL] [Abstract][Full Text] [Related]
18. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations.
Tang H; Finn RD; Thomas PD
Bioinformatics; 2019 Feb; 35(3):518-520. PubMed ID: 30032202
[TBL] [Abstract][Full Text] [Related]
19. NCMine: Core-peripheral based functional module detection using near-clique mining.
Tadaka S; Kinoshita K
Bioinformatics; 2016 Nov; 32(22):3454-3460. PubMed ID: 27466623
[TBL] [Abstract][Full Text] [Related]
20. Alignment-free protein interaction network comparison.
Ali W; Rito T; Reinert G; Sun F; Deane CM
Bioinformatics; 2014 Sep; 30(17):i430-7. PubMed ID: 25161230
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]