252 related articles for article (PubMed ID: 29112732)
1. Identifying structural variants using linked-read sequencing data.
Elyanow R; Wu HT; Raphael BJ
Bioinformatics; 2018 Jan; 34(2):353-360. PubMed ID: 29112732
[TBL] [Abstract][Full Text] [Related]
2. Structural variation analysis with strobe reads.
Ritz A; Bashir A; Raphael BJ
Bioinformatics; 2010 May; 26(10):1291-8. PubMed ID: 20378554
[TBL] [Abstract][Full Text] [Related]
3. SVIM: structural variant identification using mapped long reads.
Heller D; Vingron M
Bioinformatics; 2019 Sep; 35(17):2907-2915. PubMed ID: 30668829
[TBL] [Abstract][Full Text] [Related]
4. Discovery of large genomic inversions using long range information.
Eslami Rasekh M; Chiatante G; Miroballo M; Tang J; Ventura M; Amemiya CT; Eichler EE; Antonacci F; Alkan C
BMC Genomics; 2017 Jan; 18(1):65. PubMed ID: 28073353
[TBL] [Abstract][Full Text] [Related]
5. stLFRsv: A Germline Structural Variant Analysis Pipeline Using Co-barcoded Reads.
Guo J; Shi C; Chen X; Wang O; Liu P; Yang H; Xu X; Zhang W; Zhu H
Front Genet; 2021; 12():636239. PubMed ID: 33815469
[TBL] [Abstract][Full Text] [Related]
6. Genome sequencing in cytogenetics: Comparison of short-read and linked-read approaches for germline structural variant detection and characterization.
Uguen K; Jubin C; Duffourd Y; Bardel C; Malan V; Dupont JM; El Khattabi L; Chatron N; Vitobello A; Rollat-Farnier PA; Baulard C; Lelorch M; Leduc A; Tisserant E; Tran Mau-Them F; Danjean V; Delepine M; Till M; Meyer V; Lyonnet S; Mosca-Boidron AL; Thevenon J; Faivre L; Thauvin-Robinet C; Schluth-Bolard C; Boland A; Olaso R; Callier P; Romana S; Deleuze JF; Sanlaville D
Mol Genet Genomic Med; 2020 Mar; 8(3):e1114. PubMed ID: 31985172
[TBL] [Abstract][Full Text] [Related]
7. RepLong: de novo repeat identification using long read sequencing data.
Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z
Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180
[TBL] [Abstract][Full Text] [Related]
8. Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases.
Greer SU; Nadauld LD; Lau BT; Chen J; Wood-Bouwens C; Ford JM; Kuo CJ; Ji HP
Genome Med; 2017 Jun; 9(1):57. PubMed ID: 28629429
[TBL] [Abstract][Full Text] [Related]
9. Structural variant analysis for linked-read sequencing data with gemtools.
Greer SU; Ji HP
Bioinformatics; 2019 Nov; 35(21):4397-4399. PubMed ID: 30938757
[TBL] [Abstract][Full Text] [Related]
10. Reconstructing cancer genomes from paired-end sequencing data.
Oesper L; Ritz A; Aerni SJ; Drebin R; Raphael BJ
BMC Bioinformatics; 2012 Apr; 13 Suppl 6(Suppl 6):S10. PubMed ID: 22537039
[TBL] [Abstract][Full Text] [Related]
11. SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability.
Iakovishina D; Janoueix-Lerosey I; Barillot E; Regnier M; Boeva V
Bioinformatics; 2016 Apr; 32(7):984-92. PubMed ID: 26740523
[TBL] [Abstract][Full Text] [Related]
12. Resolving the full spectrum of human genome variation using Linked-Reads.
Marks P; Garcia S; Barrio AM; Belhocine K; Bernate J; Bharadwaj R; Bjornson K; Catalanotti C; Delaney J; Fehr A; Fiddes IT; Galvin B; Heaton H; Herschleb J; Hindson C; Holt E; Jabara CB; Jett S; Keivanfar N; Kyriazopoulou-Panagiotopoulou S; Lek M; Lin B; Lowe A; Mahamdallie S; Maheshwari S; Makarewicz T; Marshall J; Meschi F; O'Keefe CJ; Ordonez H; Patel P; Price A; Royall A; Ruark E; Seal S; Schnall-Levin M; Shah P; Stafford D; Williams S; Wu I; Xu AW; Rahman N; MacArthur D; Church DM
Genome Res; 2019 Apr; 29(4):635-645. PubMed ID: 30894395
[TBL] [Abstract][Full Text] [Related]
13. Benchmarking of structural variant detection in the tetraploid potato genome using linked-read sequencing.
Weisweiler M; Stich B
Genomics; 2023 Mar; 115(2):110568. PubMed ID: 36702293
[TBL] [Abstract][Full Text] [Related]
14. Discovery of tandem and interspersed segmental duplications using high-throughput sequencing.
Soylev A; Le TM; Amini H; Alkan C; Hormozdiari F
Bioinformatics; 2019 Oct; 35(20):3923-3930. PubMed ID: 30937433
[TBL] [Abstract][Full Text] [Related]
15. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.
Talsania K; Shen TW; Chen X; Jaeger E; Li Z; Chen Z; Chen W; Tran B; Kusko R; Wang L; Pang AWC; Yang Z; Choudhari S; Colgan M; Fang LT; Carroll A; Shetty J; Kriga Y; German O; Smirnova T; Liu T; Li J; Kellman B; Hong K; Hastie AR; Natarajan A; Moshrefi A; Granat A; Truong T; Bombardi R; Mankinen V; Meerzaman D; Mason CE; Collins J; Stahlberg E; Xiao C; Wang C; Xiao W; Zhao Y
Genome Biol; 2022 Dec; 23(1):255. PubMed ID: 36514120
[TBL] [Abstract][Full Text] [Related]
16. LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data.
Fang L; Kao C; Gonzalez MV; Mafra FA; Pellegrino da Silva R; Li M; Wenzel SS; Wimmer K; Hakonarson H; Wang K
Nat Commun; 2019 Dec; 10(1):5585. PubMed ID: 31811119
[TBL] [Abstract][Full Text] [Related]
17. Location of Balanced Chromosome-Translocation Breakpoints by Long-Read Sequencing on the Oxford Nanopore Platform.
Hu L; Liang F; Cheng D; Zhang Z; Yu G; Zha J; Wang Y; Xia Q; Yuan D; Tan Y; Wang D; Liang Y; Lin G
Front Genet; 2019; 10():1313. PubMed ID: 32010185
[TBL] [Abstract][Full Text] [Related]
18. Identification of large rearrangements in cancer genomes with barcode linked reads.
Xia LC; Bell JM; Wood-Bouwens C; Chen JJ; Zhang NR; Ji HP
Nucleic Acids Res; 2018 Feb; 46(4):e19. PubMed ID: 29186506
[TBL] [Abstract][Full Text] [Related]
19. Detection and visualization of complex structural variants from long reads.
Stephens Z; Wang C; Iyer RK; Kocher JP
BMC Bioinformatics; 2018 Dec; 19(Suppl 20):508. PubMed ID: 30577744
[TBL] [Abstract][Full Text] [Related]
20. Statistical Binning for Barcoded Reads Improves Downstream Analyses.
Shajii A; Numanagić I; Whelan C; Berger B
Cell Syst; 2018 Aug; 7(2):219-226.e5. PubMed ID: 30138581
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
