199 related articles for article (PubMed ID: 29112986)
1. Simultaneous genome-wide gene expression and transcript isoform profiling in the human malaria parasite.
Turnbull LB; Siwo GH; Button-Simons KA; Tan A; Checkley LA; Painter HJ; Llinás M; Ferdig MT
PLoS One; 2017; 12(11):e0187595. PubMed ID: 29112986
[TBL] [Abstract][Full Text] [Related]
2. Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.
Ha KCh; Coulombe-Huntington J; Majewski J
BMC Genomics; 2009 Nov; 10():519. PubMed ID: 19909511
[TBL] [Abstract][Full Text] [Related]
3. Discovery of tissue-specific exons using comprehensive human exon microarrays.
Clark TA; Schweitzer AC; Chen TX; Staples MK; Lu G; Wang H; Williams A; Blume JE
Genome Biol; 2007; 8(4):R64. PubMed ID: 17456239
[TBL] [Abstract][Full Text] [Related]
4. A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.
Fan W; Khalid N; Hallahan AR; Olson JM; Zhao LP
Theor Biol Med Model; 2006 Apr; 3():19. PubMed ID: 16603076
[TBL] [Abstract][Full Text] [Related]
5. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
Bemmo A; Benovoy D; Kwan T; Gaffney DJ; Jensen RV; Majewski J
BMC Genomics; 2008 Nov; 9():529. PubMed ID: 18990248
[TBL] [Abstract][Full Text] [Related]
6. Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays.
Eichner J; Zeller G; Laubinger S; Rätsch G
BMC Bioinformatics; 2011 Feb; 12():55. PubMed ID: 21324185
[TBL] [Abstract][Full Text] [Related]
7. Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.
Gardina PJ; Clark TA; Shimada B; Staples MK; Yang Q; Veitch J; Schweitzer A; Awad T; Sugnet C; Dee S; Davies C; Williams A; Turpaz Y
BMC Genomics; 2006 Dec; 7():325. PubMed ID: 17192196
[TBL] [Abstract][Full Text] [Related]
8. RNA sequencing and transcriptome arrays analyses show opposing results for alternative splicing in patient derived samples.
Nazarov PV; Muller A; Kaoma T; Nicot N; Maximo C; Birembaut P; Tran NL; Dittmar G; Vallar L
BMC Genomics; 2017 Jun; 18(1):443. PubMed ID: 28587590
[TBL] [Abstract][Full Text] [Related]
9. A cross-platform comparison of genome-wide expression changes of laser microdissected lung tissue of C-Raf transgenic mice using 3'IVT and exon array.
Londhe KB; Borlak J
PLoS One; 2012; 7(7):e40778. PubMed ID: 22815814
[TBL] [Abstract][Full Text] [Related]
10. Comparison of RNA-seq and microarray platforms for splice event detection using a cross-platform algorithm.
Romero JP; Ortiz-Estévez M; Muniategui A; Carrancio S; de Miguel FJ; Carazo F; Montuenga LM; Loos R; Pío R; Trotter MWB; Rubio A
BMC Genomics; 2018 Sep; 19(1):703. PubMed ID: 30253752
[TBL] [Abstract][Full Text] [Related]
11. High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity.
Zhou W; Calciano MA; Jordan H; Brenner M; Johnson S; Wu D; Lei L; Pallares D; Beurdeley P; Rouet F; Gill PS; Bracco L; Soucaille C; Einstein R
BMC Genet; 2009 Oct; 10():63. PubMed ID: 19804644
[TBL] [Abstract][Full Text] [Related]
12. A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease.
Raghavachari N; Barb J; Yang Y; Liu P; Woodhouse K; Levy D; O'Donnell CJ; Munson PJ; Kato GJ
BMC Med Genomics; 2012 Jun; 5():28. PubMed ID: 22747986
[TBL] [Abstract][Full Text] [Related]
13. A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling.
Bradford JR; Hey Y; Yates T; Li Y; Pepper SD; Miller CJ
BMC Genomics; 2010 May; 11():282. PubMed ID: 20444259
[TBL] [Abstract][Full Text] [Related]
14. Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing.
Castle J; Garrett-Engele P; Armour CD; Duenwald SJ; Loerch PM; Meyer MR; Schadt EE; Stoughton R; Parrish ML; Shoemaker DD; Johnson JM
Genome Biol; 2003; 4(10):R66. PubMed ID: 14519201
[TBL] [Abstract][Full Text] [Related]
15. Implementation of exon arrays: alternative splicing during T-cell proliferation as determined by whole genome analysis.
Whistler T; Chiang CF; Lonergan W; Hollier M; Unger ER
BMC Genomics; 2010 Sep; 11():496. PubMed ID: 20840771
[TBL] [Abstract][Full Text] [Related]
16. Studying Isoform-Specific mRNA Recruitment to Polyribosomes with Frac-seq.
Martinez-Nunez RT; Sanford JR
Methods Mol Biol; 2016; 1358():99-108. PubMed ID: 26463379
[TBL] [Abstract][Full Text] [Related]
17. MADS+: discovery of differential splicing events from Affymetrix exon junction array data.
Shen S; Warzecha CC; Carstens RP; Xing Y
Bioinformatics; 2010 Jan; 26(2):268-9. PubMed ID: 19933160
[TBL] [Abstract][Full Text] [Related]
18. Overestimation of alternative splicing caused by variable probe characteristics in exon arrays.
Gaidatzis D; Jacobeit K; Oakeley EJ; Stadler MB
Nucleic Acids Res; 2009 Sep; 37(16):e107. PubMed ID: 19528075
[TBL] [Abstract][Full Text] [Related]
19. Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms.
Dapas M; Kandpal M; Bi Y; Davuluri RV
Brief Bioinform; 2017 Mar; 18(2):260-269. PubMed ID: 26944083
[TBL] [Abstract][Full Text] [Related]
20. Computational discovery of human coding and non-coding transcripts with conserved splice sites.
Rose D; Hiller M; Schutt K; Hackermüller J; Backofen R; Stadler PF
Bioinformatics; 2011 Jul; 27(14):1894-900. PubMed ID: 21622663
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
