112 related articles for article (PubMed ID: 29126218)
1. LIBRA-WA: a web application for ligand binding site detection and protein function recognition.
Toti D; Viet Hung L; Tortosa V; Brandi V; Polticelli F
Bioinformatics; 2018 Mar; 34(5):878-880. PubMed ID: 29126218
[TBL] [Abstract][Full Text] [Related]
2. LIBRA: LIgand Binding site Recognition Application.
Hung le V; Caprari S; Bizai M; Toti D; Polticelli F
Bioinformatics; 2015 Dec; 31(24):4020-2. PubMed ID: 26315904
[TBL] [Abstract][Full Text] [Related]
3. Automatic generation of bioinformatics tools for predicting protein-ligand binding sites.
Komiyama Y; Banno M; Ueki K; Saad G; Shimizu K
Bioinformatics; 2016 Mar; 32(6):901-7. PubMed ID: 26545824
[TBL] [Abstract][Full Text] [Related]
4. Fragment-Based Ligand-Protein Contact Statistics: Application to Docking Simulations.
Macari G; Toti D; Del Moro C; Polticelli F
Int J Mol Sci; 2019 May; 20(10):. PubMed ID: 31117183
[TBL] [Abstract][Full Text] [Related]
5. Methods for predicting protein-ligand binding sites.
Xie ZR; Hwang MJ
Methods Mol Biol; 2015; 1215():383-98. PubMed ID: 25330972
[TBL] [Abstract][Full Text] [Related]
6. EasyMIFS and SiteHound: a toolkit for the identification of ligand-binding sites in protein structures.
Ghersi D; Sanchez R
Bioinformatics; 2009 Dec; 25(23):3185-6. PubMed ID: 19789268
[TBL] [Abstract][Full Text] [Related]
7. An induced annual modulation signature in COSINE-100 data by DAMA/LIBRA's analysis method.
Adhikari G; Carlin N; Choi J; Choi S; Ezeribe A; França LE; Ha CH; Hahn IS; Hollick SJ; Jeon E; Jo JH; Joo HW; Kang WG; Kauer M; Kim B; Kim H; Kim J; Kim K; Kim S; Kim SK; Kim WK; Kim Y; Kim YH; Ko YJ; Lee DH; Lee EK; Lee H; Lee HS; Lee HY; Lee IS; Lee J; Lee J; Lee MH; Lee SH; Lee SM; Lee YJ; Leonard D; Manzato BB; Maruyama RH; Neal RJ; Nikkel JA; Olsen SL; Park BJ; Park HK; Park H; Park K; Park SD; Pitta RLC; Prihtiadi H; Ra S; Rott C; Shin KA; Scarff A; Spooner NJC; Thompson WG; Yang L; Yu GH
Sci Rep; 2023 Mar; 13(1):4676. PubMed ID: 36949218
[TBL] [Abstract][Full Text] [Related]
8. mRAISE: an alternative algorithmic approach to ligand-based virtual screening.
von Behren MM; Bietz S; Nittinger E; Rarey M
J Comput Aided Mol Des; 2016 Aug; 30(8):583-94. PubMed ID: 27565795
[TBL] [Abstract][Full Text] [Related]
9. PESDserv: a server for high-throughput comparison of protein binding site surfaces.
Das S; Krein MP; Breneman CM
Bioinformatics; 2010 Aug; 26(15):1913-4. PubMed ID: 20538727
[TBL] [Abstract][Full Text] [Related]
10. Enhance the performance of current scoring functions with the aid of 3D protein-ligand interaction fingerprints.
Liu J; Su M; Liu Z; Li J; Li Y; Wang R
BMC Bioinformatics; 2017 Jul; 18(1):343. PubMed ID: 28720122
[TBL] [Abstract][Full Text] [Related]
11. TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs.
Savojardo C; Martelli PL; Fariselli P; Casadio R
Bioinformatics; 2014 Oct; 30(20):2973-4. PubMed ID: 24974200
[TBL] [Abstract][Full Text] [Related]
12. SBAL: a practical tool to generate and edit structure-based amino acid sequence alignments.
Wang CK; Broder U; Weeratunga SK; Gasser RB; Loukas A; Hofmann A
Bioinformatics; 2012 Apr; 28(7):1026-7. PubMed ID: 22332239
[TBL] [Abstract][Full Text] [Related]
13. A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation.
Brylinski M; Skolnick J
Proc Natl Acad Sci U S A; 2008 Jan; 105(1):129-34. PubMed ID: 18165317
[TBL] [Abstract][Full Text] [Related]
14. Large-scale comparison of four binding site detection algorithms.
Schmidtke P; Souaille C; Estienne F; Baurin N; Kroemer RT
J Chem Inf Model; 2010 Dec; 50(12):2191-200. PubMed ID: 20828173
[TBL] [Abstract][Full Text] [Related]
15. SIENA: Efficient Compilation of Selective Protein Binding Site Ensembles.
Bietz S; Rarey M
J Chem Inf Model; 2016 Jan; 56(1):248-59. PubMed ID: 26759067
[TBL] [Abstract][Full Text] [Related]
16. 3D-SURFER: software for high-throughput protein surface comparison and analysis.
La D; Esquivel-Rodríguez J; Venkatraman V; Li B; Sael L; Ueng S; Ahrendt S; Kihara D
Bioinformatics; 2009 Nov; 25(21):2843-4. PubMed ID: 19759195
[TBL] [Abstract][Full Text] [Related]
17. Ligand-binding site prediction using ligand-interacting and binding site-enriched protein triangles.
Xie ZR; Hwang MJ
Bioinformatics; 2012 Jun; 28(12):1579-85. PubMed ID: 22495747
[TBL] [Abstract][Full Text] [Related]
18. TRI_tool: a web-tool for prediction of protein-protein interactions in human transcriptional regulation.
Perovic V; Sumonja N; Gemovic B; Toska E; Roberts SG; Veljkovic N
Bioinformatics; 2017 Jan; 33(2):289-291. PubMed ID: 27605104
[TBL] [Abstract][Full Text] [Related]
19. Knowledge-based scoring functions in drug design: 3. A two-dimensional knowledge-based hydrogen-bonding potential for the prediction of protein-ligand interactions.
Zheng M; Xiong B; Luo C; Li S; Liu X; Shen Q; Li J; Zhu W; Luo X; Jiang H
J Chem Inf Model; 2011 Nov; 51(11):2994-3004. PubMed ID: 21999432
[TBL] [Abstract][Full Text] [Related]
20. JADOPPT: java based AutoDock preparing and processing tool.
García-Pérez C; Peláez R; Therón R; Luis López-Pérez J
Bioinformatics; 2017 Feb; 33(4):583-585. PubMed ID: 27797779
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
