BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

1102 related articles for article (PubMed ID: 29126249)

  • 1. The Encyclopedia of DNA elements (ENCODE): data portal update.
    Davis CA; Hitz BC; Sloan CA; Chan ET; Davidson JM; Gabdank I; Hilton JA; Jain K; Baymuradov UK; Narayanan AK; Onate KC; Graham K; Miyasato SR; Dreszer TR; Strattan JS; Jolanki O; Tanaka FY; Cherry JM
    Nucleic Acids Res; 2018 Jan; 46(D1):D794-D801. PubMed ID: 29126249
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Principles of metadata organization at the ENCODE data coordination center.
    Hong EL; Sloan CA; Chan ET; Davidson JM; Malladi VS; Strattan JS; Hitz BC; Gabdank I; Narayanan AK; Ho M; Lee BT; Rowe LD; Dreszer TR; Roe GR; Podduturi NR; Tanaka F; Hilton JA; Cherry JM
    Database (Oxford); 2016; 2016():. PubMed ID: 26980513
    [TBL] [Abstract][Full Text] [Related]  

  • 3. New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.
    Luo Y; Hitz BC; Gabdank I; Hilton JA; Kagda MS; Lam B; Myers Z; Sud P; Jou J; Lin K; Baymuradov UK; Graham K; Litton C; Miyasato SR; Strattan JS; Jolanki O; Lee JW; Tanaka FY; Adenekan P; O'Neill E; Cherry JM
    Nucleic Acids Res; 2020 Jan; 48(D1):D882-D889. PubMed ID: 31713622
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The ENCODE Portal as an Epigenomics Resource.
    Jou J; Gabdank I; Luo Y; Lin K; Sud P; Myers Z; Hilton JA; Kagda MS; Lam B; O'Neill E; Adenekan P; Graham K; Baymuradov UK; R Miyasato S; Strattan JS; Jolanki O; Lee JW; Litton C; Y Tanaka F; Hitz BC; Cherry JM
    Curr Protoc Bioinformatics; 2019 Dec; 68(1):e89. PubMed ID: 31751002
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ENCODE data at the ENCODE portal.
    Sloan CA; Chan ET; Davidson JM; Malladi VS; Strattan JS; Hitz BC; Gabdank I; Narayanan AK; Ho M; Lee BT; Rowe LD; Dreszer TR; Roe G; Podduturi NR; Tanaka F; Hong EL; Cherry JM
    Nucleic Acids Res; 2016 Jan; 44(D1):D726-32. PubMed ID: 26527727
    [TBL] [Abstract][Full Text] [Related]  

  • 6. modMine: flexible access to modENCODE data.
    Contrino S; Smith RN; Butano D; Carr A; Hu F; Lyne R; Rutherford K; Kalderimis A; Sullivan J; Carbon S; Kephart ET; Lloyd P; Stinson EO; Washington NL; Perry MD; Ruzanov P; Zha Z; Lewis SE; Stein LD; Micklem G
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D1082-8. PubMed ID: 22080565
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details.
    Washington NL; Stinson EO; Perry MD; Ruzanov P; Contrino S; Smith R; Zha Z; Lyne R; Carr A; Lloyd P; Kephart E; McKay SJ; Micklem G; Stein LD; Lewis SE
    Database (Oxford); 2011; 2011():bar023. PubMed ID: 21856757
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ENCODE whole-genome data in the UCSC genome browser (2011 update).
    Raney BJ; Cline MS; Rosenbloom KR; Dreszer TR; Learned K; Barber GP; Meyer LR; Sloan CA; Malladi VS; Roskin KM; Suh BB; Hinrichs AS; Clawson H; Zweig AS; Kirkup V; Fujita PA; Rhead B; Smith KE; Pohl A; Kuhn RM; Karolchik D; Haussler D; Kent WJ
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D871-5. PubMed ID: 21037257
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Ontology-Based Search of Genomic Metadata.
    Fernandez JD; Lenzerini M; Masseroli M; Venco F; Ceri S
    IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(2):233-47. PubMed ID: 26529777
    [TBL] [Abstract][Full Text] [Related]  

  • 10. "METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI's sequence read archive".
    Quiñones M; Liou DT; Shyu C; Kim W; Vujkovic-Cvijin I; Belkaid Y; Hurt DE
    BMC Bioinformatics; 2020 Sep; 21(1):378. PubMed ID: 32883210
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.
    Hitz BC; Rowe LD; Podduturi NR; Glick DI; Baymuradov UK; Malladi VS; Chan ET; Davidson JM; Gabdank I; Narayana AK; Onate KC; Hilton J; Ho MC; Lee BT; Miyasato SR; Dreszer TR; Sloan CA; Strattan JS; Tanaka FY; Hong EL; Cherry JM
    PLoS One; 2017; 12(4):e0175310. PubMed ID: 28403240
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ENCODE whole-genome data in the UCSC Genome Browser.
    Rosenbloom KR; Dreszer TR; Pheasant M; Barber GP; Meyer LR; Pohl A; Raney BJ; Wang T; Hinrichs AS; Zweig AS; Fujita PA; Learned K; Rhead B; Smith KE; Kuhn RM; Karolchik D; Haussler D; Kent WJ
    Nucleic Acids Res; 2010 Jan; 38(Database issue):D620-5. PubMed ID: 19920125
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ENCODE data in the UCSC Genome Browser: year 5 update.
    Rosenbloom KR; Sloan CA; Malladi VS; Dreszer TR; Learned K; Kirkup VM; Wong MC; Maddren M; Fang R; Heitner SG; Lee BT; Barber GP; Harte RA; Diekhans M; Long JC; Wilder SP; Zweig AS; Karolchik D; Kuhn RM; Haussler D; Kent WJ
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D56-63. PubMed ID: 23193274
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Lessons from modENCODE.
    Brown JB; Celniker SE
    Annu Rev Genomics Hum Genet; 2015; 16():31-53. PubMed ID: 26133010
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Expanded encyclopaedias of DNA elements in the human and mouse genomes.
    ; Moore JE; Purcaro MJ; Pratt HE; Epstein CB; Shoresh N; Adrian J; Kawli T; Davis CA; Dobin A; Kaul R; Halow J; Van Nostrand EL; Freese P; Gorkin DU; Shen Y; He Y; Mackiewicz M; Pauli-Behn F; Williams BA; Mortazavi A; Keller CA; Zhang XO; Elhajjajy SI; Huey J; Dickel DE; Snetkova V; Wei X; Wang X; Rivera-Mulia JC; Rozowsky J; Zhang J; Chhetri SB; Zhang J; Victorsen A; White KP; Visel A; Yeo GW; Burge CB; Lécuyer E; Gilbert DM; Dekker J; Rinn J; Mendenhall EM; Ecker JR; Kellis M; Klein RJ; Noble WS; Kundaje A; Guigó R; Farnham PJ; Cherry JM; Myers RM; Ren B; Graveley BR; Gerstein MB; Pennacchio LA; Snyder MP; Bernstein BE; Wold B; Hardison RC; Gingeras TR; Stamatoyannopoulos JA; Weng Z
    Nature; 2020 Jul; 583(7818):699-710. PubMed ID: 32728249
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Sequencing data discovery with MetaSeek.
    Hoarfrost A; Brown N; Brown CT; Arnosti C
    Bioinformatics; 2019 Nov; 35(22):4857-4859. PubMed ID: 31225863
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Ontology application and use at the ENCODE DCC.
    Malladi VS; Erickson DT; Podduturi NR; Rowe LD; Chan ET; Davidson JM; Hitz BC; Ho M; Lee BT; Miyasato S; Roe GR; Simison M; Sloan CA; Strattan JS; Tanaka F; Kent WJ; Cherry JM; Hong EL
    Database (Oxford); 2015; 2015():. PubMed ID: 25776021
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ENCODE whole-genome data in the UCSC Genome Browser: update 2012.
    Rosenbloom KR; Dreszer TR; Long JC; Malladi VS; Sloan CA; Raney BJ; Cline MS; Karolchik D; Barber GP; Clawson H; Diekhans M; Fujita PA; Goldman M; Gravell RC; Harte RA; Hinrichs AS; Kirkup VM; Kuhn RM; Learned K; Maddren M; Meyer LR; Pohl A; Rhead B; Wong MC; Zweig AS; Haussler D; Kent WJ
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D912-7. PubMed ID: 22075998
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The ENCODE Project at UC Santa Cruz.
    Thomas DJ; Rosenbloom KR; Clawson H; Hinrichs AS; Trumbower H; Raney BJ; Karolchik D; Barber GP; Harte RA; Hillman-Jackson J; Kuhn RM; Rhead BL; Smith KE; Thakkapallayil A; Zweig AS; ; Haussler D; Kent WJ
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D663-7. PubMed ID: 17166863
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Alliance of Genome Resources Portal: unified model organism research platform.
    Alliance of Genome Resources Consortium
    Nucleic Acids Res; 2020 Jan; 48(D1):D650-D658. PubMed ID: 31552413
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 56.