These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

1153 related articles for article (PubMed ID: 29126249)

  • 1. The Encyclopedia of DNA elements (ENCODE): data portal update.
    Davis CA; Hitz BC; Sloan CA; Chan ET; Davidson JM; Gabdank I; Hilton JA; Jain K; Baymuradov UK; Narayanan AK; Onate KC; Graham K; Miyasato SR; Dreszer TR; Strattan JS; Jolanki O; Tanaka FY; Cherry JM
    Nucleic Acids Res; 2018 Jan; 46(D1):D794-D801. PubMed ID: 29126249
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Principles of metadata organization at the ENCODE data coordination center.
    Hong EL; Sloan CA; Chan ET; Davidson JM; Malladi VS; Strattan JS; Hitz BC; Gabdank I; Narayanan AK; Ho M; Lee BT; Rowe LD; Dreszer TR; Roe GR; Podduturi NR; Tanaka F; Hilton JA; Cherry JM
    Database (Oxford); 2016; 2016():. PubMed ID: 26980513
    [TBL] [Abstract][Full Text] [Related]  

  • 3. New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.
    Luo Y; Hitz BC; Gabdank I; Hilton JA; Kagda MS; Lam B; Myers Z; Sud P; Jou J; Lin K; Baymuradov UK; Graham K; Litton C; Miyasato SR; Strattan JS; Jolanki O; Lee JW; Tanaka FY; Adenekan P; O'Neill E; Cherry JM
    Nucleic Acids Res; 2020 Jan; 48(D1):D882-D889. PubMed ID: 31713622
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The ENCODE Portal as an Epigenomics Resource.
    Jou J; Gabdank I; Luo Y; Lin K; Sud P; Myers Z; Hilton JA; Kagda MS; Lam B; O'Neill E; Adenekan P; Graham K; Baymuradov UK; R Miyasato S; Strattan JS; Jolanki O; Lee JW; Litton C; Y Tanaka F; Hitz BC; Cherry JM
    Curr Protoc Bioinformatics; 2019 Dec; 68(1):e89. PubMed ID: 31751002
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ENCODE data at the ENCODE portal.
    Sloan CA; Chan ET; Davidson JM; Malladi VS; Strattan JS; Hitz BC; Gabdank I; Narayanan AK; Ho M; Lee BT; Rowe LD; Dreszer TR; Roe G; Podduturi NR; Tanaka F; Hong EL; Cherry JM
    Nucleic Acids Res; 2016 Jan; 44(D1):D726-32. PubMed ID: 26527727
    [TBL] [Abstract][Full Text] [Related]  

  • 6. modMine: flexible access to modENCODE data.
    Contrino S; Smith RN; Butano D; Carr A; Hu F; Lyne R; Rutherford K; Kalderimis A; Sullivan J; Carbon S; Kephart ET; Lloyd P; Stinson EO; Washington NL; Perry MD; Ruzanov P; Zha Z; Lewis SE; Stein LD; Micklem G
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D1082-8. PubMed ID: 22080565
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details.
    Washington NL; Stinson EO; Perry MD; Ruzanov P; Contrino S; Smith R; Zha Z; Lyne R; Carr A; Lloyd P; Kephart E; McKay SJ; Micklem G; Stein LD; Lewis SE
    Database (Oxford); 2011; 2011():bar023. PubMed ID: 21856757
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ENCODE whole-genome data in the UCSC genome browser (2011 update).
    Raney BJ; Cline MS; Rosenbloom KR; Dreszer TR; Learned K; Barber GP; Meyer LR; Sloan CA; Malladi VS; Roskin KM; Suh BB; Hinrichs AS; Clawson H; Zweig AS; Kirkup V; Fujita PA; Rhead B; Smith KE; Pohl A; Kuhn RM; Karolchik D; Haussler D; Kent WJ
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D871-5. PubMed ID: 21037257
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Ontology-Based Search of Genomic Metadata.
    Fernandez JD; Lenzerini M; Masseroli M; Venco F; Ceri S
    IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(2):233-47. PubMed ID: 26529777
    [TBL] [Abstract][Full Text] [Related]  

  • 10. "METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI's sequence read archive".
    Quiñones M; Liou DT; Shyu C; Kim W; Vujkovic-Cvijin I; Belkaid Y; Hurt DE
    BMC Bioinformatics; 2020 Sep; 21(1):378. PubMed ID: 32883210
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.
    Hitz BC; Rowe LD; Podduturi NR; Glick DI; Baymuradov UK; Malladi VS; Chan ET; Davidson JM; Gabdank I; Narayana AK; Onate KC; Hilton J; Ho MC; Lee BT; Miyasato SR; Dreszer TR; Sloan CA; Strattan JS; Tanaka FY; Hong EL; Cherry JM
    PLoS One; 2017; 12(4):e0175310. PubMed ID: 28403240
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ENCODE whole-genome data in the UCSC Genome Browser.
    Rosenbloom KR; Dreszer TR; Pheasant M; Barber GP; Meyer LR; Pohl A; Raney BJ; Wang T; Hinrichs AS; Zweig AS; Fujita PA; Learned K; Rhead B; Smith KE; Kuhn RM; Karolchik D; Haussler D; Kent WJ
    Nucleic Acids Res; 2010 Jan; 38(Database issue):D620-5. PubMed ID: 19920125
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ENCODE data in the UCSC Genome Browser: year 5 update.
    Rosenbloom KR; Sloan CA; Malladi VS; Dreszer TR; Learned K; Kirkup VM; Wong MC; Maddren M; Fang R; Heitner SG; Lee BT; Barber GP; Harte RA; Diekhans M; Long JC; Wilder SP; Zweig AS; Karolchik D; Kuhn RM; Haussler D; Kent WJ
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D56-63. PubMed ID: 23193274
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Lessons from modENCODE.
    Brown JB; Celniker SE
    Annu Rev Genomics Hum Genet; 2015; 16():31-53. PubMed ID: 26133010
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Expanded encyclopaedias of DNA elements in the human and mouse genomes.
    ; Moore JE; Purcaro MJ; Pratt HE; Epstein CB; Shoresh N; Adrian J; Kawli T; Davis CA; Dobin A; Kaul R; Halow J; Van Nostrand EL; Freese P; Gorkin DU; Shen Y; He Y; Mackiewicz M; Pauli-Behn F; Williams BA; Mortazavi A; Keller CA; Zhang XO; Elhajjajy SI; Huey J; Dickel DE; Snetkova V; Wei X; Wang X; Rivera-Mulia JC; Rozowsky J; Zhang J; Chhetri SB; Zhang J; Victorsen A; White KP; Visel A; Yeo GW; Burge CB; Lécuyer E; Gilbert DM; Dekker J; Rinn J; Mendenhall EM; Ecker JR; Kellis M; Klein RJ; Noble WS; Kundaje A; Guigó R; Farnham PJ; Cherry JM; Myers RM; Ren B; Graveley BR; Gerstein MB; Pennacchio LA; Snyder MP; Bernstein BE; Wold B; Hardison RC; Gingeras TR; Stamatoyannopoulos JA; Weng Z
    Nature; 2020 Jul; 583(7818):699-710. PubMed ID: 32728249
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Sequencing data discovery with MetaSeek.
    Hoarfrost A; Brown N; Brown CT; Arnosti C
    Bioinformatics; 2019 Nov; 35(22):4857-4859. PubMed ID: 31225863
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Ontology application and use at the ENCODE DCC.
    Malladi VS; Erickson DT; Podduturi NR; Rowe LD; Chan ET; Davidson JM; Hitz BC; Ho M; Lee BT; Miyasato S; Roe GR; Simison M; Sloan CA; Strattan JS; Tanaka F; Kent WJ; Cherry JM; Hong EL
    Database (Oxford); 2015; 2015():. PubMed ID: 25776021
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ENCODE whole-genome data in the UCSC Genome Browser: update 2012.
    Rosenbloom KR; Dreszer TR; Long JC; Malladi VS; Sloan CA; Raney BJ; Cline MS; Karolchik D; Barber GP; Clawson H; Diekhans M; Fujita PA; Goldman M; Gravell RC; Harte RA; Hinrichs AS; Kirkup VM; Kuhn RM; Learned K; Maddren M; Meyer LR; Pohl A; Rhead B; Wong MC; Zweig AS; Haussler D; Kent WJ
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D912-7. PubMed ID: 22075998
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The ENCODE Project at UC Santa Cruz.
    Thomas DJ; Rosenbloom KR; Clawson H; Hinrichs AS; Trumbower H; Raney BJ; Karolchik D; Barber GP; Harte RA; Hillman-Jackson J; Kuhn RM; Rhead BL; Smith KE; Thakkapallayil A; Zweig AS; ; Haussler D; Kent WJ
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D663-7. PubMed ID: 17166863
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Alliance of Genome Resources Portal: unified model organism research platform.
    Alliance of Genome Resources Consortium
    Nucleic Acids Res; 2020 Jan; 48(D1):D650-D658. PubMed ID: 31552413
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 58.