425 related articles for article (PubMed ID: 29126390)
1. Reference-guided de novo assembly approach improves genome reconstruction for related species.
Lischer HEL; Shimizu KK
BMC Bioinformatics; 2017 Nov; 18(1):474. PubMed ID: 29126390
[TBL] [Abstract][Full Text] [Related]
2. Challenges and advances for transcriptome assembly in non-model species.
Ungaro A; Pech N; Martin JF; McCairns RJS; Mévy JP; Chappaz R; Gilles A
PLoS One; 2017; 12(9):e0185020. PubMed ID: 28931057
[TBL] [Abstract][Full Text] [Related]
3. AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references.
Bao E; Jiang T; Girke T
Bioinformatics; 2014 Jun; 30(12):i319-i328. PubMed ID: 24932000
[TBL] [Abstract][Full Text] [Related]
4. dnAQET: a framework to compute a consolidated metric for benchmarking quality of de novo assemblies.
Yavas G; Hong H; Xiao W
BMC Genomics; 2019 Sep; 20(1):706. PubMed ID: 31510940
[TBL] [Abstract][Full Text] [Related]
5. Comparative performance of transcriptome assembly methods for non-model organisms.
Huang X; Chen XG; Armbruster PA
BMC Genomics; 2016 Jul; 17():523. PubMed ID: 27464550
[TBL] [Abstract][Full Text] [Related]
6. MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data.
Madoui MA; Dossat C; d'Agata L; van Oeveren J; van der Vossen E; Aury JM
BMC Bioinformatics; 2016 Mar; 17():115. PubMed ID: 26936254
[TBL] [Abstract][Full Text] [Related]
7. A De Novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny.
Pucker B; Holtgräwe D; Rosleff Sörensen T; Stracke R; Viehöver P; Weisshaar B
PLoS One; 2016; 11(10):e0164321. PubMed ID: 27711162
[TBL] [Abstract][Full Text] [Related]
8. SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome.
Stadermann KB; Weisshaar B; Holtgräwe D
BMC Bioinformatics; 2015 Sep; 16(1):295. PubMed ID: 26377912
[TBL] [Abstract][Full Text] [Related]
9. Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly.
Patel S; Lu Z; Jin X; Swaminathan P; Zeng E; Fennell AY
BMC Genomics; 2018 Jan; 19(1):57. PubMed ID: 29343235
[TBL] [Abstract][Full Text] [Related]
10. Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.
Roach MJ; Schmidt SA; Borneman AR
BMC Bioinformatics; 2018 Nov; 19(1):460. PubMed ID: 30497373
[TBL] [Abstract][Full Text] [Related]
11. De novo likelihood-based measures for comparing genome assemblies.
Ghodsi M; Hill CM; Astrovskaya I; Lin H; Sommer DD; Koren S; Pop M
BMC Res Notes; 2013 Aug; 6():334. PubMed ID: 23965294
[TBL] [Abstract][Full Text] [Related]
12. Two low coverage bird genomes and a comparison of reference-guided versus de novo genome assemblies.
Card DC; Schield DR; Reyes-Velasco J; Fujita MK; Andrew AL; Oyler-McCance SJ; Fike JA; Tomback DF; Ruggiero RP; Castoe TA
PLoS One; 2014; 9(9):e106649. PubMed ID: 25192061
[TBL] [Abstract][Full Text] [Related]
13. Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis.
Wang S; Gribskov M
Bioinformatics; 2017 Feb; 33(3):327-333. PubMed ID: 28172640
[TBL] [Abstract][Full Text] [Related]
14. A linked-read approach to museomics: Higher quality de novo genome assemblies from degraded tissues.
Colella JP; Tigano A; MacManes MD
Mol Ecol Resour; 2020 Jul; 20(4):856-870. PubMed ID: 32153100
[TBL] [Abstract][Full Text] [Related]
15. SRAssembler: Selective Recursive local Assembly of homologous genomic regions.
McCarthy TW; Chou HC; Brendel VP
BMC Bioinformatics; 2019 Jul; 20(1):371. PubMed ID: 31266441
[TBL] [Abstract][Full Text] [Related]
16. The complex task of choosing a de novo assembly: lessons from fungal genomes.
Gallo JE; Muñoz JF; Misas E; McEwen JG; Clay OK
Comput Biol Chem; 2014 Dec; 53 Pt A():97-107. PubMed ID: 25262360
[TBL] [Abstract][Full Text] [Related]
17. Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage.
Chakraborty M; Baldwin-Brown JG; Long AD; Emerson JJ
Nucleic Acids Res; 2016 Nov; 44(19):e147. PubMed ID: 27458204
[TBL] [Abstract][Full Text] [Related]
18. Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes.
Zhou P; Silverstein KA; Ramaraj T; Guhlin J; Denny R; Liu J; Farmer AD; Steele KP; Stupar RM; Miller JR; Tiffin P; Mudge J; Young ND
BMC Genomics; 2017 Mar; 18(1):261. PubMed ID: 28347275
[TBL] [Abstract][Full Text] [Related]
19. Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements.
McCoy RC; Taylor RW; Blauwkamp TA; Kelley JL; Kertesz M; Pushkarev D; Petrov DA; Fiston-Lavier AS
PLoS One; 2014; 9(9):e106689. PubMed ID: 25188499
[TBL] [Abstract][Full Text] [Related]
20. RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads.
Liao X; Gao X; Zhang X; Wu FX; Wang J
BMC Bioinformatics; 2020 Oct; 21(1):463. PubMed ID: 33076827
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
