272 related articles for article (PubMed ID: 29133831)
1. Protein-Ligand Blind Docking Using QuickVina-W With Inter-Process Spatio-Temporal Integration.
Hassan NM; Alhossary AA; Mu Y; Kwoh CK
Sci Rep; 2017 Nov; 7(1):15451. PubMed ID: 29133831
[TBL] [Abstract][Full Text] [Related]
2. Fast, accurate, and reliable molecular docking with QuickVina 2.
Alhossary A; Handoko SD; Mu Y; Kwoh CK
Bioinformatics; 2015 Jul; 31(13):2214-6. PubMed ID: 25717194
[TBL] [Abstract][Full Text] [Related]
3. Vina-GPU 2.0: Further Accelerating AutoDock Vina and Its Derivatives with Graphics Processing Units.
Ding J; Tang S; Mei Z; Wang L; Huang Q; Hu H; Ling M; Wu J
J Chem Inf Model; 2023 Apr; 63(7):1982-1998. PubMed ID: 36941232
[TBL] [Abstract][Full Text] [Related]
4. PSOVina: The hybrid particle swarm optimization algorithm for protein-ligand docking.
Ng MC; Fong S; Siu SW
J Bioinform Comput Biol; 2015 Jun; 13(3):1541007. PubMed ID: 25800162
[TBL] [Abstract][Full Text] [Related]
5. QuickVina: accelerating AutoDock Vina using gradient-based heuristics for global optimization.
Handoko SD; Ouyang X; Su CT; Kwoh CK; Ong YS
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(5):1266-72. PubMed ID: 22641710
[TBL] [Abstract][Full Text] [Related]
6. The scoring bias in reverse docking and the score normalization strategy to improve success rate of target fishing.
Luo Q; Zhao L; Hu J; Jin H; Liu Z; Zhang L
PLoS One; 2017; 12(2):e0171433. PubMed ID: 28196116
[TBL] [Abstract][Full Text] [Related]
7. GWOVina: A grey wolf optimization approach to rigid and flexible receptor docking.
Wong KM; Tai HK; Siu SWI
Chem Biol Drug Des; 2021 Jan; 97(1):97-110. PubMed ID: 32679606
[TBL] [Abstract][Full Text] [Related]
8. InstaDock: A single-click graphical user interface for molecular docking-based virtual high-throughput screening.
Mohammad T; Mathur Y; Hassan MI
Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33105480
[TBL] [Abstract][Full Text] [Related]
9. Calculating an optimal box size for ligand docking and virtual screening against experimental and predicted binding pockets.
Feinstein WP; Brylinski M
J Cheminform; 2015; 7():18. PubMed ID: 26082804
[TBL] [Abstract][Full Text] [Related]
10. AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility.
Ravindranath PA; Forli S; Goodsell DS; Olson AJ; Sanner MF
PLoS Comput Biol; 2015 Dec; 11(12):e1004586. PubMed ID: 26629955
[TBL] [Abstract][Full Text] [Related]
11. The Performance of Several Docking Programs at Reproducing Protein-Macrolide-Like Crystal Structures.
Castro-Alvarez A; Costa AM; Vilarrasa J
Molecules; 2017 Jan; 22(1):. PubMed ID: 28106755
[TBL] [Abstract][Full Text] [Related]
12. Comprehensive evaluation of ten docking programs on a diverse set of protein-ligand complexes: the prediction accuracy of sampling power and scoring power.
Wang Z; Sun H; Yao X; Li D; Xu L; Li Y; Tian S; Hou T
Phys Chem Chem Phys; 2016 May; 18(18):12964-75. PubMed ID: 27108770
[TBL] [Abstract][Full Text] [Related]
13. A Hybrid Cuckoo Search and Differential Evolution Approach to Protein⁻Ligand Docking.
Lin H; Siu SWI
Int J Mol Sci; 2018 Oct; 19(10):. PubMed ID: 30326669
[TBL] [Abstract][Full Text] [Related]
14. Evaluation of AutoDock and AutoDock Vina on the CASF-2013 Benchmark.
Gaillard T
J Chem Inf Model; 2018 Aug; 58(8):1697-1706. PubMed ID: 29989806
[TBL] [Abstract][Full Text] [Related]
15. Multiple grid arrangement improves ligand docking with unknown binding sites: Application to the inverse docking problem.
Ban T; Ohue M; Akiyama Y
Comput Biol Chem; 2018 Apr; 73():139-146. PubMed ID: 29482137
[TBL] [Abstract][Full Text] [Related]
16. Speed vs Accuracy: Effect on Ligand Pose Accuracy of Varying Box Size and Exhaustiveness in AutoDock Vina.
Agarwal R; Smith JC
Mol Inform; 2023 Feb; 42(2):e2200188. PubMed ID: 36262028
[TBL] [Abstract][Full Text] [Related]
17. Is It Reliable to Use Common Molecular Docking Methods for Comparing the Binding Affinities of Enantiomer Pairs for Their Protein Target?
Ramírez D; Caballero J
Int J Mol Sci; 2016 Apr; 17(4):. PubMed ID: 27104528
[TBL] [Abstract][Full Text] [Related]
18. FWAVina: A novel optimization algorithm for protein-ligand docking based on the fireworks algorithm.
Li J; Song Y; Li F; Zhang H; Liu W
Comput Biol Chem; 2020 Oct; 88():107363. PubMed ID: 32861160
[TBL] [Abstract][Full Text] [Related]
19. FlexAID: Revisiting Docking on Non-Native-Complex Structures.
Gaudreault F; Najmanovich RJ
J Chem Inf Model; 2015 Jul; 55(7):1323-36. PubMed ID: 26076070
[TBL] [Abstract][Full Text] [Related]
20. Computational protein-ligand docking and virtual drug screening with the AutoDock suite.
Forli S; Huey R; Pique ME; Sanner MF; Goodsell DS; Olson AJ
Nat Protoc; 2016 May; 11(5):905-19. PubMed ID: 27077332
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
