123 related articles for article (PubMed ID: 29143012)
1. β-Alanine and N-terminal cationic substituents affect polyamide-DNA binding.
Liu B; Wang S; Aston K; Koeller KJ; Kermani SFH; Castañeda CH; Scuderi MJ; Luo R; Bashkin JK; Wilson WD
Org Biomol Chem; 2017 Nov; 15(46):9880-9888. PubMed ID: 29143012
[TBL] [Abstract][Full Text] [Related]
2. Modulation of DNA-polyamide interaction by β-alanine substitutions: a study of positional effects on binding affinity, kinetics and thermodynamics.
Wang S; Aston K; Koeller KJ; Harris GD; Rath NP; Bashkin JK; Wilson WD
Org Biomol Chem; 2014 Oct; 12(38):7523-36. PubMed ID: 25141096
[TBL] [Abstract][Full Text] [Related]
3. Effect of single pyrrole replacement with β-alanine on DNA binding affinity and sequence specificity of hairpin pyrrole/imidazole polyamides targeting 5'-GCGC-3'.
Han YW; Kashiwazaki G; Morinaga H; Matsumoto T; Hashiya K; Bando T; Harada Y; Sugiyama H
Bioorg Med Chem; 2013 Sep; 21(17):5436-41. PubMed ID: 23810670
[TBL] [Abstract][Full Text] [Related]
4. Correlation of local effects of DNA sequence and position of β-alanine inserts with polyamide-DNA complex binding affinities and kinetics.
Wang S; Nanjunda R; Aston K; Bashkin JK; Wilson WD
Biochemistry; 2012 Dec; 51(49):9796-806. PubMed ID: 23167504
[TBL] [Abstract][Full Text] [Related]
5. The thermodynamics of polyamide-DNA recognition: hairpin polyamide binding in the minor groove of duplex DNA.
Pilch DS; Poklar N; Baird EE; Dervan PB; Breslauer KJ
Biochemistry; 1999 Feb; 38(7):2143-51. PubMed ID: 10026298
[TBL] [Abstract][Full Text] [Related]
6. Influence of a terminal formamido group on the sequence recognition of DNA by polyamides.
Lacy ER; Le NM; Price CA; Lee M; Wilson WD
J Am Chem Soc; 2002 Mar; 124(10):2153-63. PubMed ID: 11878969
[TBL] [Abstract][Full Text] [Related]
7. Effects of the N-terminal acylamido group of imidazole- and pyrrole-containing polyamides on DNA sequence specificity and binding affinity.
Westrate L; Mackay H; Brown T; Nguyen B; Kluza J; Wilson WD; Lee M; Hartley JA
Biochemistry; 2009 Jun; 48(24):5679-88. PubMed ID: 19419200
[TBL] [Abstract][Full Text] [Related]
8. Expanding the recognition of the minor groove of DNA by incorporation of beta-alanine in hairpin polyamides.
Wang CC; Ellervik U; Dervan PB
Bioorg Med Chem; 2001 Mar; 9(3):653-7. PubMed ID: 11310600
[TBL] [Abstract][Full Text] [Related]
9. N-terminal Cationic Modification of Linear Pyrrole-Imidazole Polyamide Improves Its Binding to DNA.
Hatanaka J; Hirose Y; Hashiya K; Bando T; Sugiyama H
Chembiochem; 2022 Jul; 23(14):e202200124. PubMed ID: 35599232
[TBL] [Abstract][Full Text] [Related]
10. Sequence-specific DNA binding by long hairpin pyrrole-imidazole polyamides containing an 8-amino-3,6-dioxaoctanoic acid unit.
Sawatani Y; Kashiwazaki G; Chandran A; Asamitsu S; Guo C; Sato S; Hashiya K; Bando T; Sugiyama H
Bioorg Med Chem; 2016 Aug; 24(16):3603-11. PubMed ID: 27301681
[TBL] [Abstract][Full Text] [Related]
11. Structure of a beta-alanine-linked polyamide bound to a full helical turn of purine tract DNA in the 1:1 motif.
Urbach AR; Love JJ; Ross SA; Dervan PB
J Mol Biol; 2002 Jun; 320(1):55-71. PubMed ID: 12079334
[TBL] [Abstract][Full Text] [Related]
12. Discrimination of hairpin polyamides with an alpha-substituted-gamma-aminobutyric acid as a 5'-TG-3' reader in DNA minor groove.
Zhang W; Bando T; Sugiyama H
J Am Chem Soc; 2006 Jul; 128(27):8766-76. PubMed ID: 16819870
[TBL] [Abstract][Full Text] [Related]
13. Promoter scanning of the human COX-2 gene with 8-ring polyamides: unexpected weakening of polyamide-DNA binding and selectivity by replacing an internal N-Me-pyrrole with β-alanine.
Bashkin JK; Aston K; Ramos JP; Koeller KJ; Nanjunda R; He G; Dupureur CM; David Wilson W
Biochimie; 2013 Feb; 95(2):271-9. PubMed ID: 23023196
[TBL] [Abstract][Full Text] [Related]
14. Rational design of specific binding hairpin Py-Im polyamides targeting human telomere sequences.
Guo C; Kawamoto Y; Asamitsu S; Sawatani Y; Hashiya K; Bando T; Sugiyama H
Bioorg Med Chem; 2015 Feb; 23(4):855-60. PubMed ID: 25614111
[TBL] [Abstract][Full Text] [Related]
15. Synthesis and biophysical evaluation of minor-groove binding C-terminus modified pyrrole and imidazole triamide analogs of distamycin.
Brown T; Taherbhai Z; Sexton J; Sutterfield A; Turlington M; Jones J; Stallings L; Stewart M; Buchmueller K; Mackay H; O'hare C; Kluza J; Nguyen B; Wilson D; Lee M; Hartley JA
Bioorg Med Chem; 2007 Jan; 15(1):474-83. PubMed ID: 17035029
[TBL] [Abstract][Full Text] [Related]
16. Extending the language of DNA molecular recognition by polyamides: unexpected influence of imidazole and pyrrole arrangement on binding affinity and specificity.
Buchmueller KL; Staples AM; Howard CM; Horick SM; Uthe PB; Le NM; Cox KK; Nguyen B; Pacheco KA; Wilson WD; Lee M
J Am Chem Soc; 2005 Jan; 127(2):742-50. PubMed ID: 15643900
[TBL] [Abstract][Full Text] [Related]
17. Design, synthesis, and DNA binding characteristics of a group of orthogonally positioned diamino, N-formamido, pyrrole- and imidazole-containing polyamides.
Chavda S; Babu B; Patil P; Plaunt A; Ferguson A; Lee M; Tzou S; Sjoholm R; Rice T; Mackay H; Ramos J; Wang S; Lin S; Kiakos K; Wilson WD; Hartley JA; Lee M
Bioorg Med Chem; 2013 Jul; 21(13):3907-18. PubMed ID: 23647824
[TBL] [Abstract][Full Text] [Related]
18. Targeting the inverted CCAAT box 2 in the topoisomerase IIalpha promoter by JH-37, an imidazole-pyrrole polyamide hairpin: design, synthesis, molecular biology, and biophysical studies.
Henry JA; Le NM; Nguyen B; Howard CM; Bailey SL; Horick SM; Buchmueller KL; Kotecha M; Hochhauser D; Hartley JA; Wilson WD; Lee M
Biochemistry; 2004 Sep; 43(38):12249-57. PubMed ID: 15379563
[TBL] [Abstract][Full Text] [Related]
19. Next-generation sequencing studies guide the design of pyrrole-imidazole polyamides with improved binding specificity by the addition of β-alanine.
Anandhakumar C; Li Y; Kizaki S; Pandian GN; Hashiya K; Bando T; Sugiyama H
Chembiochem; 2014 Dec; 15(18):2647-51. PubMed ID: 25371287
[TBL] [Abstract][Full Text] [Related]
20. Setting anchor in the minor groove: in silico investigation into formamido N-methylpyrrole and N-methylimidazole polyamides bound by cognate DNA sequences.
Collar CJ; Lee M; Wilson WD
J Chem Inf Model; 2010 Sep; 50(9):1611-22. PubMed ID: 20804157
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]