284 related articles for article (PubMed ID: 29172147)
1. Interpreting solution X-ray scattering data using molecular simulations.
Hub JS
Curr Opin Struct Biol; 2018 Apr; 49():18-26. PubMed ID: 29172147
[TBL] [Abstract][Full Text] [Related]
2. Interpreting SAXS/WAXS Data with Explicit-Solvent Simulations: A Practical Guide.
Hermann MR; Hub JS
Methods Mol Biol; 2020; 2168():199-215. PubMed ID: 33582993
[TBL] [Abstract][Full Text] [Related]
3. Interpretation of solution x-ray scattering by explicit-solvent molecular dynamics.
Chen PC; Hub JS
Biophys J; 2015 May; 108(10):2573-2584. PubMed ID: 25992735
[TBL] [Abstract][Full Text] [Related]
4. WAXSiS: a web server for the calculation of SAXS/WAXS curves based on explicit-solvent molecular dynamics.
Knight CJ; Hub JS
Nucleic Acids Res; 2015 Jul; 43(W1):W225-30. PubMed ID: 25855813
[TBL] [Abstract][Full Text] [Related]
5. Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scattering.
Virtanen JJ; Makowski L; Sosnick TR; Freed KF
Biophys J; 2011 Oct; 101(8):2061-9. PubMed ID: 22004761
[TBL] [Abstract][Full Text] [Related]
6. Structure and ensemble refinement against SAXS data: Combining MD simulations with Bayesian inference or with the maximum entropy principle.
Chatzimagas L; Hub JS
Methods Enzymol; 2023; 678():23-54. PubMed ID: 36641209
[TBL] [Abstract][Full Text] [Related]
7. Predicting solution scattering patterns with explicit-solvent molecular simulations.
Chatzimagas L; Hub JS
Methods Enzymol; 2022; 677():433-456. PubMed ID: 36410959
[TBL] [Abstract][Full Text] [Related]
8. Hybrid Methods for Modeling Protein Structures Using Molecular Dynamics Simulations and Small-Angle X-Ray Scattering Data.
Ekimoto T; Ikeguchi M
Adv Exp Med Biol; 2018; 1105():237-258. PubMed ID: 30617833
[TBL] [Abstract][Full Text] [Related]
9. Combined Small-Angle X-ray and Neutron Scattering Restraints in Molecular Dynamics Simulations.
Chen PC; Shevchuk R; Strnad FM; Lorenz C; Karge L; Gilles R; Stadler AM; Hennig J; Hub JS
J Chem Theory Comput; 2019 Aug; 15(8):4687-4698. PubMed ID: 31251056
[TBL] [Abstract][Full Text] [Related]
10. Bayesian refinement of protein structures and ensembles against SAXS data using molecular dynamics.
Shevchuk R; Hub JS
PLoS Comput Biol; 2017 Oct; 13(10):e1005800. PubMed ID: 29045407
[TBL] [Abstract][Full Text] [Related]
11. Rapid interpretation of small-angle X-ray scattering data.
Weiel M; Reinartz I; Schug A
PLoS Comput Biol; 2019 Mar; 15(3):e1006900. PubMed ID: 30901335
[TBL] [Abstract][Full Text] [Related]
12. Reweighting of molecular simulations with explicit-solvent SAXS restraints elucidates ion-dependent RNA ensembles.
Bernetti M; Hall KB; Bussi G
Nucleic Acids Res; 2021 Aug; 49(14):e84. PubMed ID: 34107023
[TBL] [Abstract][Full Text] [Related]
13. What Can We Learn from Wide-Angle Solution Scattering?
Wang Y; Zhou H; Onuk E; Badger J; Makowski L
Adv Exp Med Biol; 2017; 1009():131-147. PubMed ID: 29218557
[TBL] [Abstract][Full Text] [Related]
14. SAXS-guided Enhanced Unbiased Sampling for Structure Determination of Proteins and Complexes.
Zhao C; Shukla D
Sci Rep; 2018 Dec; 8(1):17748. PubMed ID: 30531946
[TBL] [Abstract][Full Text] [Related]
15. Validating solution ensembles from molecular dynamics simulation by wide-angle X-ray scattering data.
Chen PC; Hub JS
Biophys J; 2014 Jul; 107(2):435-447. PubMed ID: 25028885
[TBL] [Abstract][Full Text] [Related]
16. Ultrafast anisotropic protein quake propagation after CO photodissociation in myoglobin.
Brinkmann LU; Hub JS
Proc Natl Acad Sci U S A; 2016 Sep; 113(38):10565-70. PubMed ID: 27601659
[TBL] [Abstract][Full Text] [Related]
17. Small- and wide-angle X-ray scattering (SWAXS) for quantification of aspirin content in a binary powder mixture.
Hodzic A; Llusa M; Fraser SD; Scheibelhofer O; Koller DM; Reiter F; Laggner P; Khinast JG
Int J Pharm; 2012 May; 428(1-2):91-5. PubMed ID: 22425676
[TBL] [Abstract][Full Text] [Related]
18. Small and Wide Angle X-ray Scattering studies of biological macromolecules in solution.
Liu L; Boldon L; Urquhart M; Wang X
J Vis Exp; 2013 Jan; (71):. PubMed ID: 23328742
[TBL] [Abstract][Full Text] [Related]
19. Quantifying the influence of the ion cloud on SAXS profiles of charged proteins.
Ivanović MT; Bruetzel LK; Shevchuk R; Lipfert J; Hub JS
Phys Chem Chem Phys; 2018 Nov; 20(41):26351-26361. PubMed ID: 30303199
[TBL] [Abstract][Full Text] [Related]
20. Development of Charge-Augmented Three-Point Water Model (CAIPi3P) for Accurate Simulations of Intrinsically Disordered Proteins.
de Souza JV; Zariquiey FS; Bronowska AK
Int J Mol Sci; 2020 Aug; 21(17):. PubMed ID: 32859072
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
