These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

356 related articles for article (PubMed ID: 29174494)

  • 1. Validation of Structures in the Protein Data Bank.
    Gore S; Sanz García E; Hendrickx PMS; Gutmanas A; Westbrook JD; Yang H; Feng Z; Baskaran K; Berrisford JM; Hudson BP; Ikegawa Y; Kobayashi N; Lawson CL; Mading S; Mak L; Mukhopadhyay A; Oldfield TJ; Patwardhan A; Peisach E; Sahni G; Sekharan MR; Sen S; Shao C; Smart OS; Ulrich EL; Yamashita R; Quesada M; Young JY; Nakamura H; Markley JL; Berman HM; Burley SK; Velankar S; Kleywegt GJ
    Structure; 2017 Dec; 25(12):1916-1927. PubMed ID: 29174494
    [TBL] [Abstract][Full Text] [Related]  

  • 2. OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.
    Young JY; Westbrook JD; Feng Z; Sala R; Peisach E; Oldfield TJ; Sen S; Gutmanas A; Armstrong DR; Berrisford JM; Chen L; Chen M; Di Costanzo L; Dimitropoulos D; Gao G; Ghosh S; Gore S; Guranovic V; Hendrickx PMS; Hudson BP; Igarashi R; Ikegawa Y; Kobayashi N; Lawson CL; Liang Y; Mading S; Mak L; Mir MS; Mukhopadhyay A; Patwardhan A; Persikova I; Rinaldi L; Sanz-Garcia E; Sekharan MR; Shao C; Swaminathan GJ; Tan L; Ulrich EL; van Ginkel G; Yamashita R; Yang H; Zhuravleva MA; Quesada M; Kleywegt GJ; Berman HM; Markley JL; Nakamura H; Velankar S; Burley SK
    Structure; 2017 Mar; 25(3):536-545. PubMed ID: 28190782
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The Protein Data Bank Archive.
    Velankar S; Burley SK; Kurisu G; Hoch JC; Markley JL
    Methods Mol Biol; 2021; 2305():3-21. PubMed ID: 33950382
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Worldwide Protein Data Bank validation information: usage and trends.
    Smart OS; Horský V; Gore S; Svobodová Vařeková R; Bendová V; Kleywegt GJ; Velankar S
    Acta Crystallogr D Struct Biol; 2018 Mar; 74(Pt 3):237-244. PubMed ID: 29533231
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein Data Bank: the single global archive for 3D macromolecular structure data.
    wwPDB consortium
    Nucleic Acids Res; 2019 Jan; 47(D1):D520-D528. PubMed ID: 30357364
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.
    Burley SK; Berman HM; Kleywegt GJ; Markley JL; Nakamura H; Velankar S
    Methods Mol Biol; 2017; 1607():627-641. PubMed ID: 28573592
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank.
    Feng Z; Westbrook JD; Sala R; Smart OS; Bricogne G; Matsubara M; Yamada I; Tsuchiya S; Aoki-Kinoshita KF; Hoch JC; Kurisu G; Velankar S; Burley SK; Young JY
    Structure; 2021 Apr; 29(4):393-400.e1. PubMed ID: 33657417
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D.
    Burley SK; Bhikadiya C; Bi C; Bittrich S; Chen L; Crichlow GV; Duarte JM; Dutta S; Fayazi M; Feng Z; Flatt JW; Ganesan SJ; Goodsell DS; Ghosh S; Kramer Green R; Guranovic V; Henry J; Hudson BP; Lawson CL; Liang Y; Lowe R; Peisach E; Persikova I; Piehl DW; Rose Y; Sali A; Segura J; Sekharan M; Shao C; Vallat B; Voigt M; Westbrook JD; Whetstone S; Young JY; Zardecki C
    Protein Sci; 2022 Jan; 31(1):187-208. PubMed ID: 34676613
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education.
    Burley SK; Berman HM; Christie C; Duarte JM; Feng Z; Westbrook J; Young J; Zardecki C
    Protein Sci; 2018 Jan; 27(1):316-330. PubMed ID: 29067736
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D.
    Burley SK; Bhikadiya C; Bi C; Bittrich S; Chao H; Chen L; Craig PA; Crichlow GV; Dalenberg K; Duarte JM; Dutta S; Fayazi M; Feng Z; Flatt JW; Ganesan SJ; Ghosh S; Goodsell DS; Green RK; Guranovic V; Henry J; Hudson BP; Khokhriakov I; Lawson CL; Liang Y; Lowe R; Peisach E; Persikova I; Piehl DW; Rose Y; Sali A; Segura J; Sekharan M; Shao C; Vallat B; Voigt M; Webb B; Westbrook JD; Whetstone S; Young JY; Zalevsky A; Zardecki C
    Protein Sci; 2022 Dec; 31(12):e4482. PubMed ID: 36281733
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive.
    Shao C; Yang H; Westbrook JD; Young JY; Zardecki C; Burley SK
    Structure; 2017 Mar; 25(3):458-468. PubMed ID: 28216043
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students.
    Burley SK; Berman HM; Duarte JM; Feng Z; Flatt JW; Hudson BP; Lowe R; Peisach E; Piehl DW; Rose Y; Sali A; Sekharan M; Shao C; Vallat B; Voigt M; Westbrook JD; Young JY; Zardecki C
    Biomolecules; 2022 Oct; 12(10):. PubMed ID: 36291635
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Validation analysis of EMDB entries.
    Wang Z; Patwardhan A; Kleywegt GJ
    Acta Crystallogr D Struct Biol; 2022 May; 78(Pt 5):542-552. PubMed ID: 35503203
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Remediation of the protein data bank archive.
    Henrick K; Feng Z; Bluhm WF; Dimitropoulos D; Doreleijers JF; Dutta S; Flippen-Anderson JL; Ionides J; Kamada C; Krissinel E; Lawson CL; Markley JL; Nakamura H; Newman R; Shimizu Y; Swaminathan J; Velankar S; Ory J; Ulrich EL; Vranken W; Westbrook J; Yamashita R; Yang H; Young J; Yousufuddin M; Berman HM
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D426-33. PubMed ID: 18073189
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Recommendations of the wwPDB NMR Validation Task Force.
    Montelione GT; Nilges M; Bax A; Güntert P; Herrmann T; Richardson JS; Schwieters CD; Vranken WF; Vuister GW; Wishart DS; Berman HM; Kleywegt GJ; Markley JL
    Structure; 2013 Sep; 21(9):1563-70. PubMed ID: 24010715
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).
    Adams PD; Afonine PV; Baskaran K; Berman HM; Berrisford J; Bricogne G; Brown DG; Burley SK; Chen M; Feng Z; Flensburg C; Gutmanas A; Hoch JC; Ikegawa Y; Kengaku Y; Krissinel E; Kurisu G; Liang Y; Liebschner D; Mak L; Markley JL; Moriarty NW; Murshudov GN; Noble M; Peisach E; Persikova I; Poon BK; Sobolev OV; Ulrich EL; Velankar S; Vonrhein C; Westbrook J; Wojdyr M; Yokochi M; Young JY
    Acta Crystallogr D Struct Biol; 2019 Apr; 75(Pt 4):451-454. PubMed ID: 30988261
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Announcing the launch of Protein Data Bank China as an Associate Member of the Worldwide Protein Data Bank Partnership.
    Xu W; Velankar S; Patwardhan A; Hoch JC; Burley SK; Kurisu G
    Acta Crystallogr D Struct Biol; 2023 Sep; 79(Pt 9):792-795. PubMed ID: 37561405
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RCSB Protein Data Bank: supporting research and education worldwide through explorations of experimentally determined and computationally predicted atomic level 3D biostructures.
    Burley SK; Piehl DW; Vallat B; Zardecki C
    IUCrJ; 2024 May; 11(Pt 3):279-286. PubMed ID: 38597878
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology.
    Westbrook JD; Young JY; Shao C; Feng Z; Guranovic V; Lawson CL; Vallat B; Adams PD; Berrisford JM; Bricogne G; Diederichs K; Joosten RP; Keller P; Moriarty NW; Sobolev OV; Velankar S; Vonrhein C; Waterman DG; Kurisu G; Berman HM; Burley SK; Peisach E
    J Mol Biol; 2022 Jun; 434(11):167599. PubMed ID: 35460671
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.
    Burley SK; Bhikadiya C; Bi C; Bittrich S; Chen L; Crichlow GV; Christie CH; Dalenberg K; Di Costanzo L; Duarte JM; Dutta S; Feng Z; Ganesan S; Goodsell DS; Ghosh S; Green RK; Guranović V; Guzenko D; Hudson BP; Lawson CL; Liang Y; Lowe R; Namkoong H; Peisach E; Persikova I; Randle C; Rose A; Rose Y; Sali A; Segura J; Sekharan M; Shao C; Tao YP; Voigt M; Westbrook JD; Young JY; Zardecki C; Zhuravleva M
    Nucleic Acids Res; 2021 Jan; 49(D1):D437-D451. PubMed ID: 33211854
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.