267 related articles for article (PubMed ID: 29180706)
1. Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression.
Berthelot C; Villar D; Horvath JE; Odom DT; Flicek P
Nat Ecol Evol; 2018 Jan; 2(1):152-163. PubMed ID: 29180706
[TBL] [Abstract][Full Text] [Related]
2. Enhancer evolution across 20 mammalian species.
Villar D; Berthelot C; Aldridge S; Rayner TF; Lukk M; Pignatelli M; Park TJ; Deaville R; Erichsen JT; Jasinska AJ; Turner JM; Bertelsen MF; Murchison EP; Flicek P; Odom DT
Cell; 2015 Jan; 160(3):554-66. PubMed ID: 25635462
[TBL] [Abstract][Full Text] [Related]
3. LINE retrotransposons characterize mammalian tissue-specific and evolutionarily dynamic regulatory regions.
Roller M; Stamper E; Villar D; Izuogu O; Martin F; Redmond AM; Ramachanderan R; Harewood L; Odom DT; Flicek P
Genome Biol; 2021 Feb; 22(1):62. PubMed ID: 33602314
[TBL] [Abstract][Full Text] [Related]
4. Inferring mammalian tissue-specific regulatory conservation by predicting tissue-specific differences in open chromatin.
Kaplow IM; Schäffer DE; Wirthlin ME; Lawler AJ; Brown AR; Kleyman M; Pfenning AR
BMC Genomics; 2022 Apr; 23(1):291. PubMed ID: 35410163
[TBL] [Abstract][Full Text] [Related]
5. Topology of mammalian developmental enhancers and their regulatory landscapes.
de Laat W; Duboule D
Nature; 2013 Oct; 502(7472):499-506. PubMed ID: 24153303
[TBL] [Abstract][Full Text] [Related]
6. Long-range promoter-enhancer contacts are conserved during evolution and contribute to gene expression robustness.
Laverré A; Tannier E; Necsulea A
Genome Res; 2022 Feb; 32(2):280-296. PubMed ID: 34930799
[TBL] [Abstract][Full Text] [Related]
7. Gene Regulatory Enhancers with Evolutionarily Conserved Activity Are More Pleiotropic than Those with Species-Specific Activity.
Fish A; Chen L; Capra JA
Genome Biol Evol; 2017 Oct; 9(10):2615-2625. PubMed ID: 28985297
[TBL] [Abstract][Full Text] [Related]
8. Disease Heritability Enrichment of Regulatory Elements Is Concentrated in Elements with Ancient Sequence Age and Conserved Function across Species.
Hujoel MLA; Gazal S; Hormozdiari F; van de Geijn B; Price AL
Am J Hum Genet; 2019 Apr; 104(4):611-624. PubMed ID: 30905396
[TBL] [Abstract][Full Text] [Related]
9. Prediction of gene regulatory enhancers across species reveals evolutionarily conserved sequence properties.
Chen L; Fish AE; Capra JA
PLoS Comput Biol; 2018 Oct; 14(10):e1006484. PubMed ID: 30286077
[TBL] [Abstract][Full Text] [Related]
10. A novel test for selection on cis-regulatory elements reveals positive and negative selection acting on mammalian transcriptional enhancers.
Smith JD; McManus KF; Fraser HB
Mol Biol Evol; 2013 Nov; 30(11):2509-18. PubMed ID: 23904330
[TBL] [Abstract][Full Text] [Related]
11. The life history of retrocopies illuminates the evolution of new mammalian genes.
Carelli FN; Hayakawa T; Go Y; Imai H; Warnefors M; Kaessmann H
Genome Res; 2016 Mar; 26(3):301-14. PubMed ID: 26728716
[TBL] [Abstract][Full Text] [Related]
12. Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes.
Lee S; Kohane I; Kasif S
BMC Genomics; 2005 Nov; 6():168. PubMed ID: 16309559
[TBL] [Abstract][Full Text] [Related]
13. Long-range enhancer-promoter contacts in gene expression control.
Schoenfelder S; Fraser P
Nat Rev Genet; 2019 Aug; 20(8):437-455. PubMed ID: 31086298
[TBL] [Abstract][Full Text] [Related]
14. From remote enhancers to gene regulation: charting the genome's regulatory landscapes.
Symmons O; Spitz F
Philos Trans R Soc Lond B Biol Sci; 2013; 368(1620):20120358. PubMed ID: 23650632
[TBL] [Abstract][Full Text] [Related]
15. The Evolution of Bony Vertebrate Enhancers at Odds with Their Coding Sequence Landscape.
Yousaf A; Sohail Raza M; Ali Abbasi A
Genome Biol Evol; 2015 Aug; 7(8):2333-43. PubMed ID: 26253316
[TBL] [Abstract][Full Text] [Related]
16. Dispensability of mammalian DNA.
McLean C; Bejerano G
Genome Res; 2008 Nov; 18(11):1743-51. PubMed ID: 18832441
[TBL] [Abstract][Full Text] [Related]
17. Repurposing of promoters and enhancers during mammalian evolution.
Carelli FN; Liechti A; Halbert J; Warnefors M; Kaessmann H
Nat Commun; 2018 Oct; 9(1):4066. PubMed ID: 30287902
[TBL] [Abstract][Full Text] [Related]
18. Evolution of the mammalian embryonic pluripotency gene regulatory network.
Fernandez-Tresguerres B; Cañon S; Rayon T; Pernaute B; Crespo M; Torroja C; Manzanares M
Proc Natl Acad Sci U S A; 2010 Nov; 107(46):19955-60. PubMed ID: 21048080
[TBL] [Abstract][Full Text] [Related]
19. Predicting enhancers in mammalian genomes using supervised hidden Markov models.
Zehnder T; Benner P; Vingron M
BMC Bioinformatics; 2019 Mar; 20(1):157. PubMed ID: 30917778
[TBL] [Abstract][Full Text] [Related]
20. Genetic Signatures of Evolution of the Pluripotency Gene Regulating Network across Mammals.
Endo Y; Kamei KI; Inoue-Murayama M
Genome Biol Evol; 2020 Oct; 12(10):1806-1818. PubMed ID: 32780791
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]